Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02310 ATGGCGAGATACGACAGAGCGATCACAGTCTTCTCCCCCGATGGCCATCTCTTCCAAGTCGAGTACGCTCTCGAAGCCGTTCGAAAAGGTAACGCCGCCGTCGGTGTTCGCGGTACCGATAACGTCGTTCTCGGCGTCGAGAAGAAATCCACCGCCAAACTCCAAGACTCTAGATCAGTGAGGAAGATTGTTAATCTGGACGATCACATTGCACTTGCGTGCGCTGGACTAAAAGCTGATGCTCGTGTTCTTATTAACCGGGCGCGAGTTGAATGTCAGAGTCACAGGCTTACCGTTGAGGATCCTTGCACTGTGGAGTATATAACCCGTCACATTGCAGGTCTTCAGCAGAAGTACACACAGAGTGGTGCTTGGAAAGCTAATGCTACTGGAAGAAACTCTAATTCAATCCGGGAGTTTTTGGAGAAGAACTTTAAAGAAACTTCTGGGCAAGAAACTGTCAAATTGGCTATCCGGGCCTTGCTTGAAGTTGTTGAGAGTGGAGGCAAGAACATTGAAGTTGCTGTGATGACCAAGGAGCATGGTCTGCGTCAACTTGAGGAAGCTGAAATTGACGCCATTGTTGCTGAGATTGAAGCAGAGAAAGCTGCTGCTGAGGCCGCCAAGAAAGCTCCCCCCAAGGATACATGA 651 0.4946 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDNVVLGVEKKSTAKLQDSRSVRKIVNLDDHIALACAGLKADARVLINRARVECQSHRLTVEDPCTVEYITRHIAGLQQKYTQSGAWKANATGRNSNSIREFLEKNFKETSGQETVKLAIRALLEVVESGGKNIEVAVMTKEHGLRQLEEAEIDAIVAEIEAEKAAAEAAKKAPPKDT 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02310 216 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 3 201 IPR029055 -
Vifa4g02310 216 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 124 200 - -
Vifa4g02310 216 Coils Coil 186 211 - -
Vifa4g02310 216 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 123 IPR029055 -
Vifa4g02310 216 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 124 205 IPR029055 -
Vifa4g02310 216 Pfam Proteasome subunit 124 177 IPR001353 GO:0005839|GO:0051603
Vifa4g02310 216 Pfam Proteasome subunit 27 123 IPR001353 GO:0005839|GO:0051603
Vifa4g02310 216 Pfam Proteasome subunit A N-terminal signature 4 26 IPR000426 GO:0006511|GO:0019773
Vifa4g02310 216 ProSitePatterns Proteasome alpha-type subunits signature. 4 26 IPR000426 GO:0006511|GO:0019773
Vifa4g02310 216 ProSiteProfiles Proteasome alpha-type subunit profile. 19 195 IPR023332 -
Vifa4g02310 216 SMART Proteasome_A_N_2 4 26 IPR000426 GO:0006511|GO:0019773
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02310 Vifa-Chr4 696406064 696408194 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02310 K02731 - jre:108997717 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02310 4 696406064 696408194 Vifa4g02310 4 696406064 696408194 ECH