Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02304 ATGTTGCAAGATATGTGGAACGCTCCTCCAGGTTTCAGACCATCCAAATCCGCACCGTCTTCACCTGCGAAACCTCTGTGCGTTTCGAGAACTCGTTCCGAATCTTTTCACATCACCCATAAGGTTCCGGTTGGAGATTCTCCTTATGTCAGAGCCAAAAACGTTCAGTTGGTGGATAAGGATCCGGAGAGATCGATTCCGTTGTTTTGGGCGGCGATTAATGCGGGAGATAGAGTGGATAGTGCTTTGAAGGATATGGCTATTGTTATGAAGCAACAAAATAGGGCTGAAGAAGCCATTGAAGCTATTAAATCACTTAGAATTAGATGCTCAGATCAAGCACAAGAATCGCTTGATAATATCCTTTTGGATCTATACAAGAGATGTGGTAGACTTGATGACCAAATTGCTCTATTGAGGCACAAGCTGTATTTAATCCAACAAGGGTTGGCTTTCAACGGCAAGCGCACAAAGACGGCTAGATCTCAAGGGAAGAAGTTTCAAGTTTCAGTGGAACAAGAAGCTACTAGATTGTTGGGAAACTTGGGATGGGCACTGATGCAACAAAACAACTACATTGAAGCAGAAGAAGCCTATCGCCGAGCGCTTACGCTAGCTCCGGACAACAACAAGATGTGCAATTTAGGCATATGTTTGATGAAACAGGGAAGAATTTCTGAAGCAAAAGAAACTCTCCATAGAGTCAAACCTGCAGTAACAGATGGACCAAGAGGTTCAGATTCTCATCTGAAAGCCTATGAAAGAGCACAACAAATGCTCAAAGATCTCGAATCCGAAATGATGAACAAAGGAGGAGTTGATAGGATTGAACAAAGTAGGCTCTTCGAAGCTTTTCTTGGTTCTTCATCAATTTGGCAACCTCAGCCTTGTAAGGATCATATTCACACAAGTTTGCCACCATTGAGAACAACTTCAACAACAGCAACAACGGTTCAAGATGAATTTGGTGATGAAAACATCAATTCCAACATTGTGAAAAACCATACATCAAAGTTTGGTCCTTTGGTGAACAACAACTCACTTAATGTTGCAGCTCCACCATTTTATGCAGCACCAAAAGCCTCTTTGAAGGAGTCAAATGAGAATATGAGTTTCTCCGAGACACTTAAGAGAACAAGATCTGGAAATGCTGCAGGATCAATGAGAGTAGTGAATGATACGAGCAAGGTGAATGCTGCAGAATTAGGTGTGCCTGTGCCTGGGAGCAAAGCTAGAAGGCTTTCATTTGAGAAGAATAAGTTGTATGATTTGTTACCTGATACTAAGGATTTTGAAGATGCTATTCTTTCTTCTATTTTGGGGCCTTCAAGTGGGTCCAATGAATCTACTACCACTTCTGGGATTTTGACTCAAAAATCTGATAAGAGGAGGCTTAAGGTTTTTCAAGATATTACATTGTCTTTGAGTCCAAAGGCTTGA 1440 0.416 MLQDMWNAPPGFRPSKSAPSSPAKPLCVSRTRSESFHITHKVPVGDSPYVRAKNVQLVDKDPERSIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRIRCSDQAQESLDNILLDLYKRCGRLDDQIALLRHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEEAYRRALTLAPDNNKMCNLGICLMKQGRISEAKETLHRVKPAVTDGPRGSDSHLKAYERAQQMLKDLESEMMNKGGVDRIEQSRLFEAFLGSSSIWQPQPCKDHIHTSLPPLRTTSTTATTVQDEFGDENINSNIVKNHTSKFGPLVNNNSLNVAAPPFYAAPKASLKESNENMSFSETLKRTRSGNAAGSMRVVNDTSKVNAAELGVPVPGSKARRLSFEKNKLYDLLPDTKDFEDAILSSILGPSSGSNESTTTSGILTQKSDKRRLKVFQDITLSLSPKA 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02304 479 Coils Coil 89 109 - -
Vifa4g02304 479 MobiDBLite consensus disorder prediction 1 26 - -
Vifa4g02304 479 PANTHER PROTEIN POLLENLESS 3-LIKE 2 15 473 IPR044961 -
Vifa4g02304 479 Coils Coil 246 266 - -
Vifa4g02304 479 SMART tpr_5 176 209 IPR019734 GO:0005515
Vifa4g02304 479 SUPERFAMILY TPR-like 80 235 IPR011990 GO:0005515
Vifa4g02304 479 Pfam Tetratricopeptide repeat 178 209 IPR001440 GO:0005515
Vifa4g02304 479 ProSiteProfiles TPR repeat region circular profile. 176 209 - -
Vifa4g02304 479 Gene3D Tetratricopeptide repeat domain 49 271 IPR011990 GO:0005515
Vifa4g02304 479 ProSiteProfiles TPR repeat profile. 176 209 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02304 Vifa-Chr4 695241029 695242856 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02304 - - gmx:100788369 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02304 4 695241029 695242856 Vifa4g02304 4 695241029 695242856 ECH