Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01831 ATGGAAAACAAATTCTTCTTTGTTTCTTTACTTGGTTTGCTGATAGTGGCAAATGGAGTTTCAGGAAGCATGATGTGTGACAACTTTGAAATGCTTGAAGAACTCAACAAGTTGGACTTAGAGGAGGAAATTGAGATAGAAGAACTTTCTGACATACCTTCATGGACAAGCCAGCGCGGCGGAAAGGTTCTTGTCAATGTTGATAGCTTTGGTGCTGCTGGAGATGGAGAAACCGATGATACTCAGGCTCTTCAAAAAGCATGGGAAGTTGCTTGTTCTACATCAAAAGCTGTTCTATTGGTTCCACAAGGACGCCGTTACCTTGTTAATGCAACAAGATTCATAGGGCCTTGTAAAGACAATTTAATCATCCAGATTGATGGAACATTGGTTGCCCCGGATGATCCTAAGAACTGGGATTCAAAACTTCCACGCATATGGCTCGATTTTTCTAAATTGAACAAAGCTGTTTTCCAAGGTTCTGGAGTTATCGACGGCTCAGGAAGTAAATGGTGGGCAGCATCTTGCAAGAAGAACAAGACTAATCCTTGCAAAGGCGCACCAACGGCATTTACCATTGATACAAGTTCAGGTATAAAGGTGAAAGGACTAACTATCCAGAACAGCCAACAGATGCATTTTACAATCTCGCGATGCGATTCTGTTCGAATTTTAGGAGTGAAAGTGTCTTCACCAGGAGACAGTCCAAACACCGACGGAATTCATATTAGTGAATCAACAAATGTCATTGTCCAAGACTGCAAAATCGGAACAGGGGATGATTGCATTTCAATTGTGAATGCCAGTTCTAATATCAAAATGAAGAGAATTTATTGTGGACCGGGTCATGGAATCAGTATTGGAAGCCTTGGTAAAGACAACTCAACTGGTGTTGTCACAAAAGTGATTTTGGATACAGCATTTATAAAAGACGCCACCAATGGTCTCAGAATTAAGACATGGCAGGGAGGTGCTGGATATGTTCGAGGGGTACGCTTTCAGAATGTGAGAGTGGAAAATGTATCAAACCCAATCCTCATAGATCAATTTTACTGTGATTCACCAACCACATGTCAAAACCAGGAATCAGCTTTGGAGATAAGTGAGATAATGTACCAAAACATAAGTGGGACTACAAATAGTGCTAAGGCCATTAAATTTGATTGTAGTGACACTGTTCCATGCAGCAAATTAATACTTAGCAATGTTGATTTGGAGAAACAAGATGGCACAGTTGAAACATATTGCCATTCAGCTCAAGGCTTTGGATATGGTGTAGTTCATCCTTCTGCTGATTGCCTTAGTTCCAATGATCAAATCTCTCAAGATGATGATCAATCTCAATCTGTTACTTCTCAAGACGACGATGATATTCGTCACACCGAATTATAA 1392 0.4045 MENKFFFVSLLGLLIVANGVSGSMMCDNFEMLEELNKLDLEEEIEIEELSDIPSWTSQRGGKVLVNVDSFGAAGDGETDDTQALQKAWEVACSTSKAVLLVPQGRRYLVNATRFIGPCKDNLIIQIDGTLVAPDDPKNWDSKLPRIWLDFSKLNKAVFQGSGVIDGSGSKWWAASCKKNKTNPCKGAPTAFTIDTSSGIKVKGLTIQNSQQMHFTISRCDSVRILGVKVSSPGDSPNTDGIHISESTNVIVQDCKIGTGDDCISIVNASSNIKMKRIYCGPGHGISIGSLGKDNSTGVVTKVILDTAFIKDATNGLRIKTWQGGAGYVRGVRFQNVRVENVSNPILIDQFYCDSPTTCQNQESALEISEIMYQNISGTTNSAKAIKFDCSDTVPCSKLILSNVDLEKQDGTVETYCHSAQGFGYGVVHPSADCLSSNDQISQDDDQSQSVTSQDDDDIRHTEL 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01831 463 FunFam Pectin lyase-like superfamily protein 53 437 - -
Vifa4g01831 463 SUPERFAMILY Pectin lyase-like 62 434 IPR011050 -
Vifa4g01831 463 SMART pbh1 246 267 IPR006626 -
Vifa4g01831 463 SMART pbh1 219 245 IPR006626 -
Vifa4g01831 463 SMART pbh1 328 349 IPR006626 -
Vifa4g01831 463 SMART pbh1 269 289 IPR006626 -
Vifa4g01831 463 ProSitePatterns Polygalacturonase active site. 276 289 IPR000743 GO:0004650|GO:0005975
Vifa4g01831 463 Pfam Glycosyl hydrolases family 28 94 416 IPR000743 GO:0004650|GO:0005975
Vifa4g01831 463 Gene3D - 67 427 IPR012334 -
Vifa4g01831 463 MobiDBLite consensus disorder prediction 435 463 - -
Vifa4g01831 463 PANTHER - 62 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01831 Vifa-Chr4 518936265 518938676 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01831 53 455 Glycoside Hydrolase AT1G23460 73.333 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01831 - - psat:127075072 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01831 4 518936265 518938676 Vifa4g01831 4 518936265 518938676 ECH