Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01829 ATGTTTCCAATGGCAAACATTGAAACCGTTATCAGGAGAGTCACCTCCGTAACAAACCACCTCCTTTCCACTCCAACACCACCACAACCTCAACTCATTTCCTTGTGCCACGCTTCTAGTTCCACGAATAGCGATAGCTACCAACGAGTTCATGGAAATGTTCCCTCCAACGACGTTGTTTGGGAGGTTGTTGCTTCTGATGATGAAGGAAAGCATTTCACTGACATTGTCTATGAGAAATCCGTTGGTGAAGGAATAGCAAAGATTAGTATTAATAGGCCAGAGAGAAGAAATGCATTTCGACCTCACACGGTTAAGGAGCTTATTCGTGCTTTCAATGATGCTAGAGATGATCCTTCTGTTGGTGTCATCATTCTCACTGGAAAGGGAACAGATGCATTTTGTAGTGGTGGTGACCAAGCCTTGAGGACTGAAGACGGTTATTCTGATTACGAAAATATCGGCCGCCTTAATGTGTTAGACTTGCAGGTGCAGATTCGCCGCCTTCCGAAACCAGTGATTGCAATGGTTGCAGGGTATGCTGTTGGAGGAGGACACGTATTGCATATGGTTTGTGATCTAACCATTGCAGCAGATAACGCTGTCTTCGGCCAAACGGGTCCTAAGGTTGGGAGTTTTGATGCGGGTTACGGAAGTTCTATCATGTCGCGTTTGGTAGGTCCGAAAAAAGCACGCGAAATGTGGTTTCTCGCAAGGTTTTATTCTGCTGTTGAAGCAGAGAAAATGGGCCTTATCAACACTGTTGTACCACTAGAGAATTTAGAGAAAGAAACAATCAAATGGTGTAGGGAGATACTCAGAAACAGCCCGACTGCAATTCGGGTTCTTAAGGCGGCTATTAATGCAGTGGATGACGGGCACGCCGGACTTCAGGAAATGGGTGGAAATTCAACATTGATTTTTTATGGCACTGAAGAAGCAAAAGAAGGAAAAACTGCGTATATGGAACGTAGACGCCCGGATTTTTCGAAGTTTAATCGAAGACCATAA 1011 0.4471 MFPMANIETVIRRVTSVTNHLLSTPTPPQPQLISLCHASSSTNSDSYQRVHGNVPSNDVVWEVVASDDEGKHFTDIVYEKSVGEGIAKISINRPERRNAFRPHTVKELIRAFNDARDDPSVGVIILTGKGTDAFCSGGDQALRTEDGYSDYENIGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYSAVEAEKMGLINTVVPLENLEKETIKWCREILRNSPTAIRVLKAAINAVDDGHAGLQEMGGNSTLIFYGTEEAKEGKTAYMERRRPDFSKFNRRP 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01829 336 Gene3D - 276 324 IPR014748 -
Vifa4g01829 336 PANTHER NUCLEOSIDE-DIPHOSPHATE-SUGAR EPIMERASE 6 336 - -
Vifa4g01829 336 SUPERFAMILY ClpP/crotonase 73 331 IPR029045 -
Vifa4g01829 336 Hamap 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 61 335 IPR010198 GO:0008935|GO:0009234
Vifa4g01829 336 CDD crotonase-like 76 272 - -
Vifa4g01829 336 Pfam Enoyl-CoA hydratase/isomerase 84 330 IPR001753 -
Vifa4g01829 336 FunFam 1,4-dihydroxy-2-naphthoyl-CoA synthase 274 324 - -
Vifa4g01829 336 Gene3D - 57 275 - -
Vifa4g01829 336 ProSitePatterns Enoyl-CoA hydratase/isomerase signature. 174 194 IPR018376 GO:0003824
Vifa4g01829 336 NCBIfam 1,4-dihydroxy-2-naphthoyl-CoA synthase 73 332 IPR010198 GO:0008935|GO:0009234
Vifa4g01829 336 FunFam 1,4-dihydroxy-2-naphthoyl-CoA synthase 56 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01829 Vifa-Chr4 518019698 518021836 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01829 12 336 Acyl Lipid Metabolism Gene Families AT1G60550 77.439 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01829 K01661 - gmx:100807101 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01829 4 518019698 518021836 Vifa4g01829 4 518019698 518021836 ECH