Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01798 ATGGCTCATTTTCATAACCAACAAAACCTACCCTTTTCATTTCTACTAATCCTTTCCTTAACAACATTGGTTTCTGTTTCTTCACACAGCAGGCCTTATACAATTCCATCTGTCACACATTTAACCGATTCTTTTCCTCATGTAACAATTCAAAGTGCTTTTTCTAATGCTTTTGGTGCCTCAAATGTTAGGTTTCTTAGTAATGGGTCCATGGCCACCCTGGCTCTTGACAAAATCACAGGTTCAGGCATGGTGTCACAAAATAGATACTCCTATGGATTCTTTAGTGCTGCAATCAAATTACCAGCTGGTTTGTCACCTGGAGTTGTGGTTGCTTTTTATTTGTCAAATGCAGATAAATTTCCTCACAACCACGATGAGATAGATATTGAAATTCTTGGTCATGACAAGAGAAATGATTGGGTTATTCAAACAAACGTGTATGCCAATGGAAGTGTTAGCACAGGAAGAGAAGAGAAATTTTATTTCTGGTTTGATCCAACACACCAGTATCATTATTACAGCATCTTGTGGAACAGTTATCATACTGTGTTTTTTGTTGACAATATTCCAGTGAGAGAATTCATACACAAAACTACATCCCCATTTATTTATCCATCAAAAGCAATGTCATTATATGCAACAATATGGGATGGTTCAGAATGGGCTACACATGGAGGAAAGTACCCTGTTAACTACAAATATGCACCATTTGTTGTTTCATTTACTGAAATGGAATTAAGTGGTTGCATAGCTGATCCAAATTCACCAATTTCTTCATGTTCTAAGTCAAATCCTTCAGGACAACAAGACCCTATTAGTGGAGCAGAGTTTACCAAGCTTTCACAACAACAGATAGTAGCTATGGATTGGGCTAGAAGAAAACTCATGTTTTACTCTTATTGTAATGATGTATCTAGATACAAAGTCTTGCCACCAGAATGTCACTGA 951 0.3691 MAHFHNQQNLPFSFLLILSLTTLVSVSSHSRPYTIPSVTHLTDSFPHVTIQSAFSNAFGASNVRFLSNGSMATLALDKITGSGMVSQNRYSYGFFSAAIKLPAGLSPGVVVAFYLSNADKFPHNHDEIDIEILGHDKRNDWVIQTNVYANGSVSTGREEKFYFWFDPTHQYHYYSILWNSYHTVFFVDNIPVREFIHKTTSPFIYPSKAMSLYATIWDGSEWATHGGKYPVNYKYAPFVVSFTEMELSGCIADPNSPISSCSKSNPSGQQDPISGAEFTKLSQQQIVAMDWARRKLMFYSYCNDVSRYKVLPPECH 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01798 316 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 43 242 IPR000757 GO:0004553|GO:0005975
Vifa4g01798 316 Pfam Glycosyl hydrolases family 16 53 234 IPR000757 GO:0004553|GO:0005975
Vifa4g01798 316 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 50 315 IPR044791 GO:0004553
Vifa4g01798 316 PIRSF EndGlu_transf 11 316 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vifa4g01798 316 Gene3D - 35 315 - -
Vifa4g01798 316 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 279 315 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Vifa4g01798 316 SUPERFAMILY Concanavalin A-like lectins/glucanases 53 315 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01798 Vifa-Chr4 509855326 509856863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01798 16 316 Glycoside Hydrolase AT1G10550 61.842 5.53e-141 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01798 K08235 - gmx:100778993 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01798 4 509855326 509856863 Vifa4g01798 4 509855326 509856863 ECH