Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01665 ATGACGACTATGGAGAGCTTAATCGGATTGGTTAACAGAATCCAGCAAGCTTGCACTAAGCTCGGTGACTACGGCGGCTCCGACAACAACACGTTTGCATCTCTCTGGGAAGCTCTTCCTTCCGTCGCCGTCGTTGGTGGCCAGAGTTCTGGTAAGTCTTCTGTTTTGGAAAGTATCGTTGGACGTGACTTTCTACCTAGAGGATCAGGGATTGTGACGAGGCGTCCATTGGTATTGCAGCTTCATAAGATAGATGATGGTGAAAAGGAGTATGCTGAGTTTCTTCACAGACAAGGGAGAAAGATTACCGATTTTGCTGCAGTACGTCATGAAATTCAGGAGGAAACTGACAGGGTTACGGGAAAGACAAAGCAAATATCTCCTATTCCAATTCATCTTAGCATTTATTCTCCAAAAGTTGTCAACCTAACTTTGATTGATTTGCCGGGGTTGACTAAAGTTGCTGTAGATGGACAGCCTGAGAGTACTGTTGAAGATATTGAAACTATGGTTCGATCTTATGTTGAGAAGCCTAATTGTATCATACTGGCTATATCTCCAGCCAACCAGGACATAGCAACTTCTGATGCTATCAAACTTGCCAGGGAAGTGGATCCCTCAGGTGAAAGGACATTTGGAGTGTTGACAAAGCTGGATTTGATGGACAAAGGAACTAATGCATTGGATGTCCTTGAAGGGAGATCTTATCGTCTACAACATCCTTGGGTTGGTATAGTAAATCGATCTCAAGCAGATATCAACAAAAATGTTGATATGATTATTGCCAGACGCAAGGAGGTTGAGTATTTTGAAACCAGTCCTGACTATGGCCACTTAGCCAGTAAAATGGGTTCAGTATACCTTGCAAAACTTCTCTCACAGCACTTGGAGTCAGTTATTAGGGAACGAATACCTAGTATAACATCTTTGATAAACAAAAGCATTGAAGAACTTGAATCAGAGATGGATCATCTTGGGAGGCCAATTGCTGTTGATGCGGGGGCTCAACTATACACCATCCTCGAACTTTGCCGCAAGTTTGAACGGGTATTCAAGGAGCACTTAGATGGAGGGCGGCCAGGAGGAGATAGGATATACAATGTCTTTGACAATCAGCTTCCTGCTGCTTTACGAAAGCTTCCAATTGACAAACATCTTTCTCTTCAGAATGTGAAGAGAGTGGTTTCAGAGGCGGATGGTTACCAACCTCATTTAATTGCCCCAGAGCAAGGTTACCGGCGACTGATTGAGGGGGCTCTCAGTTACTTTAGAGGCCCAGCCGAAGCTTCAGTTGATGCAGTTCACTTTGTCTTAAAAGAACTTGTAAGAAAATCAATAGGTGAAACTGAGGAATTGAGACGTTTCCCTACTCTTCAAGCTGAATTATCTGCAGCTACAAATGAGGCTCTAGAGAGGTTCCGTGAAGCGAGTAAGAAGACTACTATTCGGCTTGTGGATATGGAGTCTTCGTATCTTACTGTGGATTTCTTCCGAAAACTTCCTCAAGAAATGGAGAAAGCTGGTAATCCAGCTCAACCTTCTAATCCAGCTCAACCTACTAATCCATCTAATCGTCCTGTCCCAAACCCAAATGACGATCGATATGGTGAGGGGCATTTTAGAAGGATTGGATCAAACGTGTCCTCCTACATAGGTTTGGTGTCAGACACACTCAGGATCACTATTCCAAAGGCTGTGGTTTATTGTCAGGTCAGAGAAGCAAAACAATCATTGCTAAGCTATTTCTTCGCACAAATTGGGAAAAAAGAGGCTAAACAACTATCACAATTGTTAGACGAAGACCCTACAGTAATGGAGAGAAGACAGCAATGTTTTAAGAGGCTTGAACTATATAAAGCAGCAAGGGATGAAATTGATTCGGTTTCTTGGGTGCGATGA 1899 0.4318 MTTMESLIGLVNRIQQACTKLGDYGGSDNNTFASLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKIDDGEKEYAEFLHRQGRKITDFAAVRHEIQEETDRVTGKTKQISPIPIHLSIYSPKVVNLTLIDLPGLTKVAVDGQPESTVEDIETMVRSYVEKPNCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINKNVDMIIARRKEVEYFETSPDYGHLASKMGSVYLAKLLSQHLESVIRERIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRKFERVFKEHLDGGRPGGDRIYNVFDNQLPAALRKLPIDKHLSLQNVKRVVSEADGYQPHLIAPEQGYRRLIEGALSYFRGPAEASVDAVHFVLKELVRKSIGETEELRRFPTLQAELSAATNEALERFREASKKTTIRLVDMESSYLTVDFFRKLPQEMEKAGNPAQPSNPAQPTNPSNRPVPNPNDDRYGEGHFRRIGSNVSSYIGLVSDTLRITIPKAVVYCQVREAKQSLLSYFFAQIGKKEAKQLSQLLDEDPTVMERRQQCFKRLELYKAARDEIDSVSWVR 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01665 632 SMART dynamin_3 4 256 IPR001401 GO:0003924|GO:0005525
Vifa4g01665 632 Gene3D Dynamin, middle domain 331 598 - -
Vifa4g01665 632 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 65 74 IPR019762 -
Vifa4g01665 632 SMART GED_2 535 628 IPR003130 GO:0003924|GO:0005525
Vifa4g01665 632 Pfam Dynamin family 42 217 IPR045063 -
Vifa4g01665 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 313 IPR027417 -
Vifa4g01665 632 MobiDBLite consensus disorder prediction 505 537 - -
Vifa4g01665 632 ProSiteProfiles GED domain profile. 540 632 IPR020850 -
Vifa4g01665 632 FunFam Dynamin-related protein 1C 336 608 - -
Vifa4g01665 632 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 36 305 IPR030381 GO:0005525
Vifa4g01665 632 CDD DLP_1 39 305 IPR001401 GO:0003924|GO:0005525
Vifa4g01665 632 Gene3D - 4 314 IPR027417 -
Vifa4g01665 632 Pfam Dynamin GTPase effector domain 537 628 IPR003130 GO:0003924|GO:0005525
Vifa4g01665 632 FunFam dynamin-related protein 1E 4 314 - -
Vifa4g01665 632 PANTHER DYNAMIN 5 628 IPR022812 -
Vifa4g01665 632 PRINTS Dynamin signature 64 81 IPR022812 -
Vifa4g01665 632 PRINTS Dynamin signature 229 248 IPR022812 -
Vifa4g01665 632 PRINTS Dynamin signature 187 205 IPR022812 -
Vifa4g01665 632 PRINTS Dynamin signature 137 154 IPR022812 -
Vifa4g01665 632 PRINTS Dynamin signature 206 222 IPR022812 -
Vifa4g01665 632 PRINTS Dynamin signature 39 57 IPR022812 -
Vifa4g01665 632 Pfam Dynamin central region 226 494 IPR000375 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01665 Vifa-Chr4 478490457 478495776 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01665 - - gmx:100790977 1070.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01665 4 478490457 478495776 Vifa4g01665 4 478490457 478495776 ECH