Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01653 ATGTCCACGCTACTTCCATCCTCTTTCATTTCTTCTTCTTCCATATCTCCGATCACTCCCCCTCTCGCTCGCATCTCCCTCCGTAACGCCGCCGTCAAATGCAATAATGCTGTAGTCTCTTTGAACTCGGCGAACGGAATTCCATATCGTTCCCCTGAACTTTCAGCTAACGGTTCAACTTCGATTCCGAGTTTTCTTGTGGCGCCAAACACTCACATCCATGATCTCGTTAACAGAAATCGTCTTCGGATATTCTCCGGTACCGCCAATCCCGCACTCGCTCAGGAAATTGCATGCTATATGGGCCTGGATTTGGGCAAAATTAAGATAAAGCGTTTTGCCGATGGTGAGATATATGTCCAACTGCAAGAGAGTGTCAGAGGGTGTGATGTGTTCCTTGTGCAGCCCACGTGTCCCCCAGCGAATGAGAATCTTATGGAGCTTCTCGTAATGATTGATGCCTGTAGGAGAGCTTCAGCCAAGAATATTACTGCAGTCATTCCGTATTTTGGATATGCTAGAGCTGATAGAAAGACTCAAGGGCGTGAGTCAATTGCTGCTAAGCTTGTAGCAAATTTAATTACAGAAGCAGGTGCAAATCGTGTTCTTGCATGTGACCTCCACTCTGGGCAGTCTATGGGTTACTTCGATATTCCAGTTGATCATGTGTATGGACAGCCTGTTATTCTCGATTACCTTGCCAGCAAGACTATTTGTTCCGATGATTTGGTAGTTGTCTCGCCAGATGTTGGTGGTGTAGCTAGAGCACGTGCTTTTGCCAAAAAGTTATCTGATGCTCCTTTAGCTATTGTTGATAAAAGGCGCCATGGGCATAATGTTGCTGAGGTGATGAACCTGATAGGTGATGTAAAGGGAAAAGTAGCAGTTATGGTAGATGACATGATTGATACTGCTGGAACCATCGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAGTCTATGCATGCACTACTCATGCTGTTTTCAGTCCTCCTGCTATTGAGAGATTGTCAAGCGGTTTATTTCAAGAAGTTATCATAACTAATACAATTCCAGTTTCCGAGAAAAACTATTTCCCCCAATTAACTGTCTTATCAGTGGCAAACCTTCTGGGCGAGACCATATGGCGTGTTCATGATGACTGCTCAGGTGGAATTGAAACTTTTTCCAGTTTGGGCATTGATTGA 1197 0.4495 MSTLLPSSFISSSSISPITPPLARISLRNAAVKCNNAVVSLNSANGIPYRSPELSANGSTSIPSFLVAPNTHIHDLVNRNRLRIFSGTANPALAQEIACYMGLDLGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTICSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACTTHAVFSPPAIERLSSGLFQEVIITNTIPVSEKNYFPQLTVLSVANLLGETIWRVHDDCSGGIETFSSLGID 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01653 398 CDD PRTases_typeI 241 353 IPR000836 -
Vifa4g01653 398 Gene3D - 225 368 IPR029057 -
Vifa4g01653 398 Pfam Phosphoribosyl synthetase-associated domain 283 386 IPR005946 GO:0000287|GO:0004749|GO:0009165
Vifa4g01653 398 ProSitePatterns Phosphoribosyl pyrophosphate synthase signature. 206 221 IPR000842 GO:0000287|GO:0004749|GO:0009156|GO:0044249
Vifa4g01653 398 Gene3D - 85 383 IPR029057 -
Vifa4g01653 398 SMART Pribosyltran_N_2 82 198 - -
Vifa4g01653 398 FunFam Ribose-phosphate pyrophosphokinase 85 237 - -
Vifa4g01653 398 Pfam N-terminal domain of ribose phosphate pyrophosphokinase 82 198 IPR029099 -
Vifa4g01653 398 Hamap Putative ribose-phosphate pyrophosphokinase [prs]. 82 392 IPR037515 GO:0004749
Vifa4g01653 398 SUPERFAMILY PRTase-like 147 383 IPR029057 -
Vifa4g01653 398 PANTHER RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER 81 386 IPR005946 GO:0000287|GO:0004749|GO:0009165
Vifa4g01653 398 NCBIfam ribose-phosphate diphosphokinase 83 385 IPR005946 GO:0000287|GO:0004749|GO:0009165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01653 Vifa-Chr4 473325217 473336750 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01653 K00948 - gmx:100789585 659.833