Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01639 ATGATGGCAGTATTGAGTAGTGGGACTCCATGGACAAAGGTTGTTACACCATCCTTTCCCTTTCAATTTCTTCATCAGTCACATGCTTACACTTCAAGAATCTTATCCTTCCGACGTAAATTCTCTGTCAATGCTCTTTCACAACAATCCCTACCCGTTCGTGTTCGTTTTGCTCCTTCTCCTACCGGTAATCTTCATGTTGGTGGTGCCAGAACTGCCCTCTTCAACTACTTGTTTGCCAGGTCTAAAGGTGGGAAATTTGTGTTGAGAATTGAGGATACTGATTTGGAGAGGTCTACAAGGGAATCTGAAGAGGCAGTGCTTCGAGATCTTTCTTGGCTTGGACTTGATTGGGATGAAGGGCCTGGTGTTGGTGGAGATTATGGTCCTTATAGACAATCTGAGAGGAATTCTTTGTACAAACAATATGCCGAGAAGCTTCTTCAATCGGGTCAAGTTTATCGCTGTTTCTGTTCTAATGAGGAACTAGAGAAAATGAAGGAGGATGCTAAATTAAAACAATTGCCGCCAGTATACACGGGTAAATGGGCGTATGCAACAGATAAGGAAGTAGAAGAAGAGCTGGAAAAAGGAACTCCATATACATTCCGGTTTCGTGTCCCGAAAGGAAGTTTGAAAATTAGCGACTTAATACGAGGCGAGGTTAGTTGGAATTTGGATACACTTGGAGATTTTGTGATAATGAGGAGTAATGGTCAACCAGTTTATAACTTTTGTGTGACTGTTGACGATGCTACCATGGCTATTTCCCATGTTATCAGAGCAGAGGAGCATTTACCGAACACTCTAAGGCAGGCATTAATTTATAAGGCACTAGAATTTCCCATGCCTAATTTTGCCCATGTTTCCTTGATCTTAGCTCCTGATAGGAGTAAATTATCAAAACGACATGGAGCAACATCTGTCGGTCAGTACAGGGAAATGGGATATCTACCTGAGGCAATGATGAATTACCTAGCATTATTAGGTTGGGGCGATGGGACCGAAAATGAGTTCTTTACCCTTGATAAACTTGTTGAAAGATTCACTATTGAACGAGTGAACAAAAGTGGCGCTGTTTTTGATTCCACAAAGTTGAGATGGATGAATGGTCAACATTTAAGAGCACGTCCATCAGAGGACTTGAACAAACTTATCGCAGAGCGCTGGAAGACATCTGGCATGCTCACAATATCAGAAGGGCCCTTTGTTGATGAATCGATTCAACTACTTAAGGATGGAATTGAATTGATAACTGATGCAGATACTGCACTTTCGAGTTTGCTTTCTTATCCTCTATATTCTACTTTACAAAGCCACGAAGCCGAATCTGTCATACAAGATAATCTTCCTGAGTTTTGTACCAGTTTCTTGGCTGCCTACGATAGTGGTGATCTGTTACGTGCACTCGAAGAAGGCCAAGCTGGTTGGAAAAATTGGGTCAAAGGCTTCGGCAAATCACTTAAGCGCAAGGGAAAATCACTCTTCATGCCCCTTCGGCTTCTGCTGACCGGAAAACTCCACGGACCAGATATCGGAGCTACTGTTGTATTGCTTTATAAAGCTGGGACTAGTGATATCATAGCTCCTGAAGTTGGTTTTGTGACAATTGATGAAAGAGTTAAAGTTCTTAGGCAAACTAATTGGGAAACATTGTCCAAAGATCATGCTGTGAAGGAAACTGCTTCTACTGTTTAA 1698 0.4193 MMAVLSSGTPWTKVVTPSFPFQFLHQSHAYTSRILSFRRKFSVNALSQQSLPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTRESEEAVLRDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYAEKLLQSGQVYRCFCSNEELEKMKEDAKLKQLPPVYTGKWAYATDKEVEEELEKGTPYTFRFRVPKGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALEFPMPNFAHVSLILAPDRSKLSKRHGATSVGQYREMGYLPEAMMNYLALLGWGDGTENEFFTLDKLVERFTIERVNKSGAVFDSTKLRWMNGQHLRARPSEDLNKLIAERWKTSGMLTISEGPFVDESIQLLKDGIELITDADTALSSLLSYPLYSTLQSHEAESVIQDNLPEFCTSFLAAYDSGDLLRALEEGQAGWKNWVKGFGKSLKRKGKSLFMPLRLLLTGKLHGPDIGATVVLLYKAGTSDIIAPEVGFVTIDERVKVLRQTNWETLSKDHAVKETASTV 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01639 565 Pfam Anticodon binding domain 400 521 IPR045462 -
Vifa4g01639 565 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 59 70 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vifa4g01639 565 NCBIfam glutamate--tRNA ligase 53 522 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Vifa4g01639 565 SUPERFAMILY Nucleotidylyl transferase 53 361 - -
Vifa4g01639 565 Gene3D - 436 528 IPR020751 -
Vifa4g01639 565 PRINTS Glutamyl-tRNA synthetase signature 257 265 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vifa4g01639 565 PRINTS Glutamyl-tRNA synthetase signature 241 251 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vifa4g01639 565 PRINTS Glutamyl-tRNA synthetase signature 70 81 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vifa4g01639 565 PRINTS Glutamyl-tRNA synthetase signature 56 68 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vifa4g01639 565 PRINTS Glutamyl-tRNA synthetase signature 85 98 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vifa4g01639 565 Pfam tRNA synthetases class I (E and Q), catalytic domain 53 368 IPR020058 GO:0004812|GO:0005524|GO:0043039
Vifa4g01639 565 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 362 521 IPR008925 GO:0000049
Vifa4g01639 565 FunFam Glutamate--tRNA ligase chloroplastic/mitochondrial 435 528 - -
Vifa4g01639 565 Hamap Glutamate--tRNA ligase [gltX]. 52 545 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Vifa4g01639 565 CDD GluRS_core 53 375 IPR033910 GO:0006424|GO:0008270
Vifa4g01639 565 FunFam Glutamate--tRNA ligase, mitochondrial 46 377 - -
Vifa4g01639 565 PANTHER GLUTAMATE--TRNA LIGASE 42 544 - -
Vifa4g01639 565 Gene3D HUPs 44 377 IPR014729 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01639 K01885 - gmx:100810730 946.036