Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01626 ATGAAAGGATTCATTGCCTATGTTTTGATTCTTTCTTTCATTTCACCTTATATATGTCTAACATTGGAATATGTAACCGAAAATAATACTTATAATGTGATGCAATATGGTGCAATTGGCGATGGAAAATCTGATGATACACAAGCATTTTCAAGTGCATGGAGTAGTGCCTGTAATGCAGAAGGAATGTCAACATTGGTTATACCATCTAAAAAATCATTCTTGGTGACCAAAGTAAACTTTAGCGGTCCCTGCGATGCTAAAATTCTCTTTCAGTTTGAAGGAAAAATAGTTGCACCTGGTAAAGAAGAGTGGAAAGCTGAATCGCATTGGATTACAGTCGGATATTTAAATGGAATCACAATTGATGGTAATGGTCTGGGAGAAATCGATGGAAATGGTTCTACTTGGTGGGATTGTTCGAATTGTGTTCGACCAGTGCTATTTCATTTTCATTCATGCAATGATCTTACTGTTAGTAACCTAATGATCAGTAATAGTCCCAGAGCTCATGTATCTGTTAATCAGTGTAATGGTGCAACATTCTCTAATATATCCATTGATTCTCCTGCTACTAGTCCAAACACTGATGGATTTGACATTTCTTCCTCCACTAATATCTCTATACAAGATTCCAATATAAAAGCTGGTGATGATTGTATCGCAATCAATGGTGGCTCATTTTTTGTGAATGTTACTCGAGTTACTTGTGGACCAGGCCATGGAATAAGTGTTGGTAGCCTTGGTAAATTTAATTCAACGGAGCGTGTTTCAGATATTTATGTACGAAATTGTACTTTCATGGGATCTACTAATGGAGCAAGAATCAAAACAATTTTGTTCATCTGCTGTTTTAATATTCAATTGGATAAAAACAACATTGTAGCTGCTAAAGAAGGAGGAAAAACTTTTGTCTTTTGTAGAAATGCTCATGGAACAGTTAGAGATACTATTCCAAATGTCTATTGTCTTTCTGAATAA 981 0.3537 MKGFIAYVLILSFISPYICLTLEYVTENNTYNVMQYGAIGDGKSDDTQAFSSAWSSACNAEGMSTLVIPSKKSFLVTKVNFSGPCDAKILFQFEGKIVAPGKEEWKAESHWITVGYLNGITIDGNGLGEIDGNGSTWWDCSNCVRPVLFHFHSCNDLTVSNLMISNSPRAHVSVNQCNGATFSNISIDSPATSPNTDGFDISSSTNISIQDSNIKAGDDCIAINGGSFFVNVTRVTCGPGHGISVGSLGKFNSTERVSDIYVRNCTFMGSTNGARIKTILFICCFNIQLDKNNIVAAKEGGKTFVFCRNAHGTVRDTIPNVYCLSE 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01626 326 PANTHER - 28 279 - -
Vifa4g01626 326 SMART pbh1 177 203 IPR006626 -
Vifa4g01626 326 SMART pbh1 257 278 IPR006626 -
Vifa4g01626 326 SMART pbh1 204 225 IPR006626 -
Vifa4g01626 326 Pfam Glycosyl hydrolases family 28 58 279 IPR000743 GO:0004650|GO:0005975
Vifa4g01626 326 Gene3D - 20 323 IPR012334 -
Vifa4g01626 326 ProSitePatterns Polygalacturonase active site. 234 247 IPR000743 GO:0004650|GO:0005975
Vifa4g01626 326 SUPERFAMILY Pectin lyase-like 19 324 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01626 Vifa-Chr4 467958886 467961473 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01626 1 278 Glycoside Hydrolase AT5G27530 44.170 1.78e-71 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01626 K01184 - mtr:25500200 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01626 4 467958886 467961473 Vifa4g01626 4 467958886 467961473 ECH