Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01624 ATGCAAATATTCATTACTTATATTTTGATTCTTTGTTTTATTTCACCTTGTTTAAGTACACTCTCAAATGTTGGAACCACAAATGATACTTATAATGTAATGCAATATGGAGCAGTTGGTGATGGCAAAACTGATGATACTCAAGCATTTGCAAGTGCATGGAGTAAAGCATGTAAAGCAGGAGGGATGTCAACATTAGTTATACCATCAGGAAAATCATTCTTTGTTAGAACTCTAAATTTTTATGGTCCTTGCAATGCTAAAATTCTCATCCAGTTCCAAGGAAAAATAATTGCACCTCCTAAAGATGGGTGGAAAAGTGGGCCATATTTCATTAGCATCGAACGTGTAAATGGACTTACAATTGATGGCAATGATCAAGGAGGAGTTGATGGAGATGGTTCTACTTGGTGGGATTGTAAAAGTTGTAATCGACCTGGGGTCTTGTATTTTCATGCATGCAATGATCTCAGTGTTAATAAACTGAAAATCAGTAATAGTCCAAAAGCTCATGTATCTGTTAATCAATGCAATCATGCAACATTCTCTGGTATATCCATTGATTCACCTGCTACGAGTCCCAACACAGATGGATTCGACATTTCTTTTTCCACTTATGTCTTGATAAAAGATTCCAACATAAAAGCTGGTGATGATTGTATTGCCATAAATGGTGGCTCATCTTTTATCAATGTTACTGGAGTTTATTGTGGACCGGGACATGGGATAAGTGTTGGTAGCCTTGGAATAAAGAGGCCTGATGATCGAGTTTCTAATGTTTATGTGCGAAATTGCACTTTTACGGGAACTCAAAATGGAGCAAGAATCAAGACAGTTCAGGGTGGATCGGGCTATGCAAAAAATATTACATATGAGCAAATAAAACTTCAAAATGTTAGGAACCCAATATTTATTGATCAAGCATACAATGCTCGTCTAGATGATACATCGGTATTGGTGAGTTCTGTGACATATCGAAGATTTTCCGGAACTTCTAGTTCTGAGTTTGCTATTAATTTAAATTGCAGCTCATCCGGATGTTTTGACATTTTATTGGAACAAAACAACATTGTATTTCCTGGAAAGACGGCTTCTGCTTTTTGTAGAAATGCTCATGGAACTGCTACAAATACTATTCCAAATGTTGGTTGTCTATCTAAATAA 1164 0.3617 MQIFITYILILCFISPCLSTLSNVGTTNDTYNVMQYGAVGDGKTDDTQAFASAWSKACKAGGMSTLVIPSGKSFFVRTLNFYGPCNAKILIQFQGKIIAPPKDGWKSGPYFISIERVNGLTIDGNDQGGVDGDGSTWWDCKSCNRPGVLYFHACNDLSVNKLKISNSPKAHVSVNQCNHATFSGISIDSPATSPNTDGFDISFSTYVLIKDSNIKAGDDCIAINGGSSFINVTGVYCGPGHGISVGSLGIKRPDDRVSNVYVRNCTFTGTQNGARIKTVQGGSGYAKNITYEQIKLQNVRNPIFIDQAYNARLDDTSVLVSSVTYRRFSGTSSSEFAINLNCSSSGCFDILLEQNNIVFPGKTASAFCRNAHGTATNTIPNVGCLSK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01624 387 Gene3D - 19 383 IPR012334 -
Vifa4g01624 387 Pfam Glycosyl hydrolases family 28 58 373 IPR000743 GO:0004650|GO:0005975
Vifa4g01624 387 ProSitePatterns Polygalacturonase active site. 234 247 IPR000743 GO:0004650|GO:0005975
Vifa4g01624 387 SUPERFAMILY Pectin lyase-like 24 385 IPR011050 -
Vifa4g01624 387 PANTHER - 29 374 - -
Vifa4g01624 387 SMART pbh1 177 203 IPR006626 -
Vifa4g01624 387 SMART pbh1 257 278 IPR006626 -
Vifa4g01624 387 SMART pbh1 204 225 IPR006626 -
Vifa4g01624 387 SMART pbh1 286 307 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01624 Vifa-Chr4 467827950 467830456 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01624 31 377 Glycoside Hydrolase AT5G27530 45.682 1.01e-94 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01624 K01184 - mtr:25500200 464.922