Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01619 ATGGCGCTACAGTTTGTGAAACAGCACCACTTACGAGGTTTGCAGAACGGGACAACAACCTTAACTTTCCTTTCTTTGTTACGAAATCTGAAGCTCCCAGGAACAGTGAAATGGGTCGGTGGCGAAACAGTAGTTAAGTTATCCTTTAGAAGCTATGCTACTGCAAAATCAGAAAGGATTATACCAATCAAAAAGAAAAAGAGGCTGGATGAAGTATGCCTTGAAAGGTATCAGCAATATAGTCGATCCGTCATCCAGTCATGGATTTTGCAAGGAAAAGTATATGTGAATGGGAAGGTGATTAATAAAGCCGGTACCCCTGTTTCTGAGAAATCTGTAGTCGAGATAATAGCTGAAGTTCCCAAATATGTATGTAGAGCTGGACATAAGCTGGAAGGTGCCATTGAACAGCTCGGTGTCGATGTTGCCGGTAAAGTGGCACTTGATTCTGGGCTGTCGACCGGAGGGTTTACTGACTGCTTACTTCAGTATGGCGCATCACATGTTTATGGGGTTGATGTAGGTTATGGACAGGTAGCAGAAAAAATTCGAAGAGATGAACGTGTATCTATTATAGAGCGGACAAATTTAAGATATCTCAAAGAACTCCCACAAAATGTTGACTTGGTGACCCTAGACCTCTCATTCATCTCTATTCTTACGGTCATGCCTGCTGTGGTAAATGTTATGAAGGAAGATGCTGCATTAGTGACCTTGGTTAAACCGCAATTTGAAGCTCGGAGATCTCAAGTAGGAAAGGGAGGGATAGTGAAAGATCCTGTTGTCCATCAAGAGGTTCTTGAGAAGATTACCAAGGGAGTCGAGAGTTTTGGTTTCTGCAGCAAAGGTTGGATCGAGTCTCCTCTCAAAGGTGCGCAGGGTAATACAGAATTCCTTGTTCACTTCAGCAGAATCCATAACAAAGGTTCTAAAAATCATGAAGAAATTAGAGAAGAACCTAAGCTTGATGATGAATTTCTTCAATCTTCAGAGAAGTAG 999 0.4204 MALQFVKQHHLRGLQNGTTTLTFLSLLRNLKLPGTVKWVGGETVVKLSFRSYATAKSERIIPIKKKKRLDEVCLERYQQYSRSVIQSWILQGKVYVNGKVINKAGTPVSEKSVVEIIAEVPKYVCRAGHKLEGAIEQLGVDVAGKVALDSGLSTGGFTDCLLQYGASHVYGVDVGYGQVAEKIRRDERVSIIERTNLRYLKELPQNVDLVTLDLSFISILTVMPAVVNVMKEDAALVTLVKPQFEARRSQVGKGGIVKDPVVHQEVLEKITKGVESFGFCSKGWIESPLKGAQGNTEFLVHFSRIHNKGSKNHEEIREEPKLDDEFLQSSEK 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01619 332 Gene3D Vaccinia Virus protein VP39 126 331 IPR029063 -
Vifa4g01619 332 PANTHER BACTERIAL HEMOLYSIN-LIKE PROTEIN 62 310 IPR047048 GO:0008168
Vifa4g01619 332 SMART s4_6 67 132 IPR002942 GO:0003723
Vifa4g01619 332 CDD S4 67 116 - -
Vifa4g01619 332 Pfam FtsJ-like methyltransferase 123 302 IPR002877 GO:0008168|GO:0032259
Vifa4g01619 332 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 305 IPR029063 -
Vifa4g01619 332 NCBIfam TlyA family rRNA (cytidine-2'-O)-methyltransferase 68 297 IPR004538 -
Vifa4g01619 332 MobiDBLite consensus disorder prediction 310 332 - -
Vifa4g01619 332 CDD AdoMet_MTases 148 227 - -
Vifa4g01619 332 Gene3D - 56 123 IPR036986 GO:0003723
Vifa4g01619 332 Pfam S4 domain 68 113 IPR002942 GO:0003723
Vifa4g01619 332 SUPERFAMILY Alpha-L RNA-binding motif 66 119 - -
Vifa4g01619 332 ProSiteProfiles S4 RNA-binding domain profile. 67 127 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01619 K06442 - gmx:100781303 498.049