Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01611 ATGAATGAAGATAACCACAAAAACGATTCTCTTGTCGAAGAATTTACACATTCTAAGAGGTTCATGCAGGGTGGGGGACATAAGAGGACAAATTTAGATGCATTGCTTGATGCTATAGACGAAAGTGAAGGGCATCTAAATGGTGTTGATGATGGTATGGACCAAAGTGGAGGGCAAGAAGGTGGTGTTGGTGATGTTATAGACCAAAGTGGAGGACATGTAGATGGTGTTGATGATGCTATGGATCAAATTGAAGGGCAGAAAGATGGTGTTGTTGGCGATGCTATCGACCAAAGTGAAAGGCAAATGAATGATGTTGATGATGCTATGGAACAAAGTGGAGGACATTCATATGGTGTTGATGATGCTATGGACCAAAATGGAGGGCATGAAGAAAGTGTTGGTGATGTTGTAGACCAAAGTGAAGGGCGCATGGATGGTATTGATGGTGCTATAGACCAAAATGAAGGGCAAGTGCATGGTGTTGGCCTAAATGAACTCCAAGCTAAAGTTCACAAGGGTGAAGAAGGGGTGAAGACCACAACAACAACAACCTTGGAAGCTCCGAATGATGTTCCAGCTGCTGATGATACTGATGAAGAAATTGAAGAGCGTGGAAATGATTCTTTTGCTGAAAAGGAACATTCCCAGGAGGAAAAAGAGGTATCAGATTATGAAGATGAAAAAGAAGAAGATGATGAAGATGAATCAGATGAAGAAAATGGAGTTGCTGATCTTGAAGGTCTATCTCTTGATGATGGCTTCTTTGAAGTTGAAGCTATTCGTCGCAAGAGATACCGCAAGGGGAAGTTGGAGTACTTTGTGAAATGGTCGGGATGGGAGGAGTCAGCAAATACTTGGGAGCCTCGAGATAATTTGGTTGCTCTTCCTGATATTGTTCGAGCTTTTGAGGAAGGCTTGACATCGACACCGCATCAGAAGCGCAAGCGCAAACAATCTAGTAATAGCGCTCCAGTCAAGAAAAGGGTGGAGCGTTCTGCCACTCCTTACAGCCTTAGAAGCATAAAAACTGGTTCAACTAGCACCAACGATTCAAAGGCGGCTAACAGTAATTCACAGCCCGCCGCCTCTCTCAACGAACAACACAGTATTCCCGACATTCCTGCATTTCCTCAGACCGTGCTGTTTGCTGACAGAGTAGAAAATTACGGAGATGGAAGCAGTCTTGAAAAAGTCAATCATGCTAATGATGATATGTCTGTGGATCCTCCACAAGATGTTCCTCAAAATAATGAGGAAAACGAGTCTGATCCTAAGCTTACTCCAAACATTGAAGAAAACGAGTCTGATCCTAAGCTTACTCCAAACATAGAAGAAAACAAGTCAGATTCTAAGCTTACTCCAAACATCGAAGAAAACAAGTCGGATCCTAAGCTTACTCCAAACATTGAAGAAAACAAGTCTGATCCAGAGCTTACTCGAAGCATTGAAGAAAACAAGTCTGGTCCTAAGCTTACTCGAAAAAATAAGGCAAACAAATCTGATCCTAAGCTTACTCCAAACATTGAAGAAAACAAGCCGGGTCCTAGGCTTACTCGAAAAAATAAGGCAAGTAAGTCTGATCCTAAGCCTACTCCAAACATTGAAGAAAACAAGTCGGGTCCTAGGCTTACTCGAAAAAATAAGGCAAATAAATCTGATCCTAAGCCTACTCCTAACATTGAAGAAAACAAGTCAGGTCCTAGGCTTACTCGGAAAAATAAGGCAAACAAGTCGGATCCTAAGCTTACTCCAAACATTGAAGAAAAAGAGTCTGATCCTAAGCTTACTCCAACAAATATTGAAGAAAAAGAGTCTGATCCTAAGCTTACTCCAAACATCGAAGAAGACAAGTCGGGTCCTAAGCTTACTCCAAACATTGAAGAAAAACAGTCTGATCCTAAGCTTACTCCAAATATTGAAGAAAAAGAGTCTGATCCTAAGCTTACTCCAAACATCGAAGAAAACAAGTCGGGTCCTAAGCTTACTCCAAACATTGAAGAAAAACAGTCTGATCCTAAGCTTACTCCAAACATTGAAGAAAAAGAGTCTGATTCTAAGCTTACTCTAAATATAGAAGAAAACAGGTCCAATCCTAAGCTTACTCCAAACATTGAAGAAAACGACTCTGATCCTAAGCTTATTCCAAACAAGGAGGAAAACAAGGTTGATCCTAAGCTTACTCCAAATATTGAAGAAAACGAGTATGATCCTAAGCTAACTCCAAACAAGGAAGAAAGCAAGTCTGATCCTAAGCTTAGCAATATACAGTTTGAAGAAGCCGTGACTCCTCCAGTAAAAACTCACATGATTGAACAACCAACTGCGGTTTCCACAGAAGGGATTACTTCAAAAAATTCAGGTAGCGCAGAACCGGTTCAAACTGGCTCCGGACGGTTAGGAACCAGACGGAGAAAAACTACTGCTGTGAAGAGGTTCACCAGAACTTCAATTGCTCGAAAGGTACCCGAGGGTACAGCTGAACCAGCACAAACAGGAGCTACTGATATTGCGGCTCCTAGTAGTCACACAGCGGCAGAACCTGTGAGACCGGGGTCTGATATTGTTGAGATTGAGAAGCCGGTAGGCTATTCAGCTGCAGAAGCCAGCACCAAGCAGGAAGCTTCGGTGACCTTCAAGGTTAAAAGGTCGGATGGATCAGAAGTTATGGTCGATAATAACTATCTAAAAACAAACAATCCGATTCTTCTGATTGATTACTATGAGCAGCATATGCAGTACAGTCTGAAACCGTCGTGA 2760 0.4199 MNEDNHKNDSLVEEFTHSKRFMQGGGHKRTNLDALLDAIDESEGHLNGVDDGMDQSGGQEGGVGDVIDQSGGHVDGVDDAMDQIEGQKDGVVGDAIDQSERQMNDVDDAMEQSGGHSYGVDDAMDQNGGHEESVGDVVDQSEGRMDGIDGAIDQNEGQVHGVGLNELQAKVHKGEEGVKTTTTTTLEAPNDVPAADDTDEEIEERGNDSFAEKEHSQEEKEVSDYEDEKEEDDEDESDEENGVADLEGLSLDDGFFEVEAIRRKRYRKGKLEYFVKWSGWEESANTWEPRDNLVALPDIVRAFEEGLTSTPHQKRKRKQSSNSAPVKKRVERSATPYSLRSIKTGSTSTNDSKAANSNSQPAASLNEQHSIPDIPAFPQTVLFADRVENYGDGSSLEKVNHANDDMSVDPPQDVPQNNEENESDPKLTPNIEENESDPKLTPNIEENKSDSKLTPNIEENKSDPKLTPNIEENKSDPELTRSIEENKSGPKLTRKNKANKSDPKLTPNIEENKPGPRLTRKNKASKSDPKPTPNIEENKSGPRLTRKNKANKSDPKPTPNIEENKSGPRLTRKNKANKSDPKLTPNIEEKESDPKLTPTNIEEKESDPKLTPNIEEDKSGPKLTPNIEEKQSDPKLTPNIEEKESDPKLTPNIEENKSGPKLTPNIEEKQSDPKLTPNIEEKESDSKLTLNIEENRSNPKLTPNIEENDSDPKLIPNKEENKVDPKLTPNIEENEYDPKLTPNKEESKSDPKLSNIQFEEAVTPPVKTHMIEQPTAVSTEGITSKNSGSAEPVQTGSGRLGTRRRKTTAVKRFTRTSIARKVPEGTAEPAQTGATDIAAPSSHTAAEPVRPGSDIVEIEKPVGYSAAEASTKQEASVTFKVKRSDGSEVMVDNNYLKTNNPILLIDYYEQHMQYSLKPS 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01611 919 MobiDBLite consensus disorder prediction 305 372 - -
Vifa4g01611 919 SUPERFAMILY Chromo domain-like 250 311 IPR016197 -
Vifa4g01611 919 SMART chromo_7 255 308 IPR000953 -
Vifa4g01611 919 CDD CD_CSD 256 305 - -
Vifa4g01611 919 Gene3D - 208 311 - -
Vifa4g01611 919 MobiDBLite consensus disorder prediction 772 802 - -
Vifa4g01611 919 SMART ChS_2 844 917 IPR008251 GO:0005634
Vifa4g01611 919 MobiDBLite consensus disorder prediction 566 624 - -
Vifa4g01611 919 MobiDBLite consensus disorder prediction 425 507 - -
Vifa4g01611 919 MobiDBLite consensus disorder prediction 634 651 - -
Vifa4g01611 919 MobiDBLite consensus disorder prediction 337 367 - -
Vifa4g01611 919 MobiDBLite consensus disorder prediction 656 672 - -
Vifa4g01611 919 MobiDBLite consensus disorder prediction 540 559 - -
Vifa4g01611 919 MobiDBLite consensus disorder prediction 206 222 - -
Vifa4g01611 919 MobiDBLite consensus disorder prediction 711 753 - -
Vifa4g01611 919 MobiDBLite consensus disorder prediction 169 249 - -
Vifa4g01611 919 MobiDBLite consensus disorder prediction 391 808 - -
Vifa4g01611 919 Pfam Chromo (CHRromatin Organisation MOdifier) domain 256 305 IPR023780 -
Vifa4g01611 919 MobiDBLite consensus disorder prediction 223 246 - -
Vifa4g01611 919 MobiDBLite consensus disorder prediction 691 705 - -
Vifa4g01611 919 MobiDBLite consensus disorder prediction 514 533 - -
Vifa4g01611 919 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 181 454 IPR044251 GO:0006325|GO:0031507
Vifa4g01611 919 ProSiteProfiles Chromo and chromo shadow domain profile. 256 315 IPR000953 -
Vifa4g01611 919 MobiDBLite consensus disorder prediction 673 690 - -
Vifa4g01611 919 Coils Coil 208 235 - -
Vifa4g01611 919 MobiDBLite consensus disorder prediction 410 424 - -
Vifa4g01611 919 ProSitePatterns Chromo domain signature. 273 293 IPR023779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01611 Vifa-Chr4 464206305 464212361 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01611 - K24286 psat:127076596 1019.22