Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01579 ATGGAAGTCCCAACAAAGCCTTCTTCTTGTATCTCCAAGTGGCAATGCTCTTCAACTAAAAGCAAAATTGTTCAAAACTTCAATCCTATATGCCAAGCTGTCCAAAAACTAACTCTCAAAGGAAAGTTTGTGATCACCTTGAATCAAAAGAAATCAATACCTGGAAAATTCATTTCTGTTCAGATTTATAGCGGCACAGAAGTCGATCCTAATACCGGTAAAGGATGGTTGAGTGAAAAAGCATATTTTAAAGAATGTGGTAGCAAGAAGCATCACCATGATGAAGTTGATGATACACAAATCAAGATTAAGACATATAAGATTAAGCTACATGTTGATGCGAATTTTGGAACTCCGAGAGCTTTTGTGATTCAAAACAAAAACAGCAAGAAATTCTATCTTCTTTCTGCGTCTATTGAAACTTGTACCAATAGAATCATTCACTTTGATTGCAATTCTTGGATTTATCCAATCAAGAAGACTAAATTCGATAGACTTTTTTTCTCAAATAGATGCTATGTTCCGAGTCAAACACCTAGAGCTTTGTTGGAACTAAGAAATGAAGAGCTTGATCAACTGAGAGGTGATGGAATGGGAGAAAGAAAAGAATGGGATAGAATCTATGACTATGACTACTACAACGATCTCGGCGATCCTGATAAAGGTTCGGAGCATTTTAGACCTGTCTTGGGAGGTTCGAGGTTATATCCATATCCACGTCGAGTTAGAACAGGTCGAAAAAATAGTTCAACAAATTTTGACATATATGTTCCTTCAGATGAGATGTTTACCCCTAACAAATTGAAGGAGCTCAAGTCAAATTCTATCCAAGCCATAGTACAATTACTACCTTCAAAGACGGAATCGTTACATCAACAAAGTTCGAGAAACGTTGAATCATTTGAAGAGATACTTAACATGCTCTCTAGCAATAGAAACCAAACAATAGAGGGATGGATCAGAGACAACTTAAAGAAATTGGTGCCAAATGAGGACTTAAAGGAAATAACTCATGCAATCAAGGAAAACCAGATGCATGTTCCTATCCCTCAAAACATACATGAAAATGAATGGGCTTGGAGTGATGACATGGAATTTGGACGACAAATGCTTGCAGGAACACACCCTGTCAGAATCCAGTGCTTGATGACATATCCACCTCAAAACAAATATGGAGTACAAAGTTCAATAAAACAATCAACCATAGAACAGATGCTTGAAGGATGGACACTTCCTCAGGCTTTGGAACAAGGAAGAATATTCATGTTGGATCACCATGACTATCTCATGCCATATTTGAACAGAATAAATGCAAATGGGGTATGTGCTTATGCATCAAGGACACTTCTTTTTTTAAGGAGTGATGGCATGCTTAAGCCACTGACCATAGAACTCAGCTTACCAGGCTCTTCTCTAGCTCTTGAAATCCATAGAATTTTTCTTCCATCAAAGCAAGGGACACAAGCAGCACTCTGGCAACTTGCCAAAGCTCATGTTTTAGCTAATGATACTTTTTACCATCTACTAGTTAGCCATTGGTTATACACACATGCAGTTGTTGAACCATTTATCCTTGCTACCAAAAGAAGGCTAAGTGTAATGCATCCAATCCATAAGATATTGAACCCTCATTTCAAAGACACCATGCACATAAATGCCTTGACTAGACATACCCTTATCAACTCTGGAGGAATTCTTGAGAAAATATTATTTCCCGGCGAAACCTGTATGCAAATAACATGTGATCACTATAAAGATTGGAAATTTATCGAACAAGGACTTCCTTCTGATCTTCTCAAAAGGGGCATGGCTGTAGAAAGCCTAGATGAGAACAACCCAAATGGGATTCAACTTCTCATGTTGGACTATCCCTATGCCATTGATGGACTTGAAATATGGGCTGCCATAAAATCATGGGTCAATGACTTCTGCTCATTCTTCTACAAAGACAATGACTCCATCGTAGCTGATGTAGAACTCCAAGCATGGTGGTCAGAGATTCGATCTATTGGCCACGGCGACAACCACAACGACACATGGTGGTACCAAATGACAACACTCTCAAATCTTGTAGAAGCAATAACAACTCTCATATGGATTGCTTCGGCACGCCATGCAGTTATAAACCACCAAAAACATTCTCATAATGATAATTCTCCCACACTATGCAGGAAATTTGTTCCAGTAGAAGGAACGGTTGAATTTGGTGAGTTCCTTAAGGATCCTGATAAGTTCTTCATGAAGATGTTACCTGATAGGTTTGAGACGAGCCTTGGTTTAGCATTGGTAGATTTGCTCTCAAAAAATGCTTACGATGAAATGTACTTGTTGAGATGTCAACCATCACATGGTTGGATAGATAATGAAATCGTTCAGAATAGATTTGCTGAGTTCAAAGAAGAACTTAAGGAGATTCAAATAAGGATCTTGCAAAGAAATAAAGATCCTAAGCTCAAGAATAGGCGCGTCCCTGCAAAAATTGATCATAACATTTTGTATCCCAAGATGCCTAGTTCTGGATCAAGAAGATGGAATCATGGGAAGAGGAGTGTCTTATAA 2559 0.3834 MEVPTKPSSCISKWQCSSTKSKIVQNFNPICQAVQKLTLKGKFVITLNQKKSIPGKFISVQIYSGTEVDPNTGKGWLSEKAYFKECGSKKHHHDEVDDTQIKIKTYKIKLHVDANFGTPRAFVIQNKNSKKFYLLSASIETCTNRIIHFDCNSWIYPIKKTKFDRLFFSNRCYVPSQTPRALLELRNEELDQLRGDGMGERKEWDRIYDYDYYNDLGDPDKGSEHFRPVLGGSRLYPYPRRVRTGRKNSSTNFDIYVPSDEMFTPNKLKELKSNSIQAIVQLLPSKTESLHQQSSRNVESFEEILNMLSSNRNQTIEGWIRDNLKKLVPNEDLKEITHAIKENQMHVPIPQNIHENEWAWSDDMEFGRQMLAGTHPVRIQCLMTYPPQNKYGVQSSIKQSTIEQMLEGWTLPQALEQGRIFMLDHHDYLMPYLNRINANGVCAYASRTLLFLRSDGMLKPLTIELSLPGSSLALEIHRIFLPSKQGTQAALWQLAKAHVLANDTFYHLLVSHWLYTHAVVEPFILATKRRLSVMHPIHKILNPHFKDTMHINALTRHTLINSGGILEKILFPGETCMQITCDHYKDWKFIEQGLPSDLLKRGMAVESLDENNPNGIQLLMLDYPYAIDGLEIWAAIKSWVNDFCSFFYKDNDSIVADVELQAWWSEIRSIGHGDNHNDTWWYQMTTLSNLVEAITTLIWIASARHAVINHQKHSHNDNSPTLCRKFVPVEGTVEFGEFLKDPDKFFMKMLPDRFETSLGLALVDLLSKNAYDEMYLLRCQPSHGWIDNEIVQNRFAEFKEELKEIQIRILQRNKDPKLKNRRVPAKIDHNILYPKMPSSGSRRWNHGKRSVL 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01579 852 Gene3D PLAT/LH2 domain 22 191 - -
Vifa4g01579 852 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 48 173 IPR036392 GO:0005515
Vifa4g01579 852 SMART LH2_4 39 170 IPR001024 GO:0005515
Vifa4g01579 852 Gene3D - 505 844 - -
Vifa4g01579 852 Coils Coil 788 808 - -
Vifa4g01579 852 ProSiteProfiles PLAT domain profile. 56 169 IPR001024 GO:0005515
Vifa4g01579 852 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 172 842 IPR013819 GO:0016702|GO:0046872
Vifa4g01579 852 Gene3D - 285 376 IPR027433 -
Vifa4g01579 852 ProSitePatterns Lipoxygenases iron-binding region signature 2. 534 544 IPR020834 GO:0016702|GO:0046872
Vifa4g01579 852 PANTHER LIPOXYGENASE 41 838 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vifa4g01579 852 Gene3D - 377 503 - -
Vifa4g01579 852 SUPERFAMILY Lipoxigenase 174 836 IPR036226 -
Vifa4g01579 852 PRINTS Lipoxygenase signature 489 506 IPR013819 GO:0016702|GO:0046872
Vifa4g01579 852 PRINTS Lipoxygenase signature 507 524 IPR013819 GO:0016702|GO:0046872
Vifa4g01579 852 PRINTS Lipoxygenase signature 527 547 IPR013819 GO:0016702|GO:0046872
Vifa4g01579 852 Gene3D - 192 283 - -
Vifa4g01579 852 Pfam Lipoxygenase 182 834 IPR013819 GO:0016702|GO:0046872
Vifa4g01579 852 PRINTS Plant lipoxygenase signature 763 777 IPR001246 GO:0016491
Vifa4g01579 852 PRINTS Plant lipoxygenase signature 204 220 IPR001246 GO:0016491
Vifa4g01579 852 PRINTS Plant lipoxygenase signature 444 468 IPR001246 GO:0016491
Vifa4g01579 852 PRINTS Plant lipoxygenase signature 237 256 IPR001246 GO:0016491
Vifa4g01579 852 PRINTS Plant lipoxygenase signature 139 157 IPR001246 GO:0016491
Vifa4g01579 852 PRINTS Plant lipoxygenase signature 165 186 IPR001246 GO:0016491
Vifa4g01579 852 PRINTS Plant lipoxygenase signature 345 361 IPR001246 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01579 Vifa-Chr4 459535690 459538952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01579 37 834 Acyl Lipid Metabolism Gene Families AT3G22400 42.150 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01579 K00454 - gmx:100793997 1296.57