Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01571 ATGGCTTTCTCTCTGCTTCCCTTTCTCCTCTACTCACTGATTCTGCAATCCGTCGGTGTTGCAGCTCAAACCAAAAGTACCATAGCCATCGGTGATTCTTTTACTGCAGGAACCAACACCTCTCCATGGTTGTTTTCACCTTCTGGTGACTTTGCCTTTGGTTTTCTTCCACTCAAAGACACTAATCTTTTTTTGCTTTCCATTTGGTATGCAAAAATTTCCGAGAAAACTATTGTGTGGTATGCTAATGGAGATAGTCCTGCACCAAAAGGGTCAAAAGTGCAACTCACTGCCAAAGATGGGTTGGTGCTAACTTCTCCAAATGGTGTCAAGTTATGGAATACCGAGGGACTCAACAGCGCAGTTTCTCGAGGTGTGTTCAATGACACCGGCAACTTTGTGCTCGAGGATGGTCATTTCAATAGTCTTTGGGAAACTTTCAAGTTTCCTAGTGACACCTTGTTGCCTTCTCAGGTTGTTGAGAAAGGAAGAAAGCTCTCTTCAAGGCTTAAGGAGACAGATTTCAGTAAAGGAAGGTTTGAGCTTCTTTTACAAAGTGATGGTAATCTTGTTATGCATTCTATTAATTTACCATCTGGTTATGTCAATGAGAACTACTATGAAAGTCAAACAGTTGGATCCAGTAAATCTAGTGCTGGAACTCTACTGGTTTTTGACAGATCAGGGGACTTGTATGTCTTGGGAGAGAACAATGAGAAATACAATGTGTCAGGAGAAGAAAGTAATGTTTCTACCACAGATTTTTATCTTAGAGCAACTCTTAATTTTGATGGAGTGTTCACACTTTTCAAGCATCCAAAGAGTTCAACTAAGAGTGAAGGTTGGACCACAGTGTGGTCCATACCTGATAATATATGTCTTTATACTGTCAGTTCTGGTAGTGGTGTTTGTGGATACAATAGCTTTTGCACTTTGGGAGATGATAAGAGACCAACATGTCAGTGTCCAAAAAGTTACTCACTGGTTGATCCTGGTGATCCATATGGTAGCTGTAAGCCAGATTTCATACAAGGATGTGTAGAAAGAAATGATCTCTACGACTTTGATATTTTGATAGACACCGATTGGCCTTTATCAGATTATGTGCTTCAAAGGCCTTTTACTGAAGAACAATGTAGGAAATCTTGTTTGGAAGATTGCTTTTGTTCGGTGGCAATTTTCAGGTTAGGGGATAGTTGTTGGAAGAAGAAGTTACCACTCTCAAATGGGAGAGTTGATGCAACTCTCAATGGTGCTAAGGCCTTCTTGAAAGTGAAAAAAGGCAGTGTCTCCCTTGGTTGA 1302 0.4063 MAFSLLPFLLYSLILQSVGVAAQTKSTIAIGDSFTAGTNTSPWLFSPSGDFAFGFLPLKDTNLFLLSIWYAKISEKTIVWYANGDSPAPKGSKVQLTAKDGLVLTSPNGVKLWNTEGLNSAVSRGVFNDTGNFVLEDGHFNSLWETFKFPSDTLLPSQVVEKGRKLSSRLKETDFSKGRFELLLQSDGNLVMHSINLPSGYVNENYYESQTVGSSKSSAGTLLVFDRSGDLYVLGENNEKYNVSGEESNVSTTDFYLRATLNFDGVFTLFKHPKSSTKSEGWTTVWSIPDNICLYTVSSGSGVCGYNSFCTLGDDKRPTCQCPKSYSLVDPGDPYGSCKPDFIQGCVERNDLYDFDILIDTDWPLSDYVLQRPFTEEQCRKSCLEDCFCSVAIFRLGDSCWKKKLPLSNGRVDATLNGAKAFLKVKKGSVSLG 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01571 433 Gene3D - 150 282 IPR036426 -
Vifa4g01571 433 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 209 IPR036426 -
Vifa4g01571 433 CDD B_lectin 44 150 IPR001480 -
Vifa4g01571 433 FunFam Serine/threonine-protein kinase 151 296 - -
Vifa4g01571 433 Pfam D-mannose binding lectin 77 161 IPR001480 -
Vifa4g01571 433 SMART blect_4 33 150 IPR001480 -
Vifa4g01571 433 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 22 148 - -
Vifa4g01571 433 Gene3D - 20 149 IPR036426 -
Vifa4g01571 433 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 34 427 - -
Vifa4g01571 433 ProSiteProfiles Bulb-type lectin domain profile. 31 148 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01571 Vifa-Chr4 458522110 458523411 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01571 - - mtr:11430405 756.903