Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01569 ATGACTCAAACCGCCGCGGGCTTTGAAAATCTTATCGGCTATTACGAACCTCCAGTTCAAGAGCTTATTGTTATTGATGAAGTACTCTCTGCTATGGTTGGGGTTGAAGGACGTTACATTTCAATCAAAACACTTCGTGGAAAGAAGGATGAAATTATTAATTTTCTGGTGGACCCATCTATGGATTTGGCACTGCAGGAGTTGGCAAAACGGATTTTCCCTCTTTGTAGGAGCTTTCTGTTGATCAACCAATTTGTGGAATCAAGGTCTCAGTTCCAGAATGGGCTAGTTAATCATGCCTTTTCTGCTGCCCTTAGGGAATTCCTTCTCGATTACCAGGCCTTGGTGGCACAACTTGAGCACCAATTCCGGCTTGGGAGACTTTCCCTTCAAGGATTGTGGTTCTACTGTCAGCCCACGTTGAAGTCAATGCAGGCATTGTCTACTGTCATACAGAAGGCTTCAGCCAATAATTTTTCTGGTTCCGCCGTTCTTAACTTACTACAGAGCCAGGCAAAGGCTATGGCTGGAGATAATGCAGTTAGGTTGTTGCTGGAGAAAATGACACAATGTGCAAGTAGAGCCTACATGAGCATACTAGAAAGATGGGTCTATGAAGGAGTAATAGATGATCCTTATGGTGAATTTTTCATTGCAGAAGACAAATCTCTTCAAAAGGAGAGTCTTACTAAAGACTATGATGCTAAGTATTGGCGGCAGCGTTACAGCCTCAAAGATGGAATTCCTAGTTTCCTTGCAAATACTGCAGGAACAATTTTGACCACAGGAAAATATCTAAATGTTCTGAGAGAATGTGGACACAATGTTCAGGTCCCTCCGTCAGAAAATTCAAAACTAATGAGCTTTGGCTCAAATCATCATTATCTTGAATGTATTAAGGCTGCTTATAACTTCGCAAGTGGTGAACTCGTGAATCTCATTAAGGAAAAGTATGATCTAACAGGAAAATTGCGGTCAATAAAACACTACCTTCTTCTTGATCAGGGGGATTTCTTAGTGCATTTTATGGATATTGCTCGAGATGAGCTGGCCAAAAAACCTGATGAAGTATCAGTTGAGAAGCTGCAGTCTCTTCTAGACCTTGCTCTGCGTACAACAGCAGCTTCTGTCGATCCTTATCATGAAGGCTTAACCTGTATTGTGGAAAGATCATCTTTGCTTAAAAGGTTGGGCACATTTAATGTCACTGAAGTTAGCCAGAGAGATTCTAGTAATAATGATATTCTGGAGGAGCCTGTTAGCATCACCGGCCTTGAAACATTTTCACTAAGTTATAAGGTGCACTGGCCATTGTCTATAGTATTATCACGTAAAGCCCTTACAAATTACCAGTTAATTTTTCGATTTCTCTTCCACTGCAAACATGTTGACCGTCAGCTATGTGGAGCATGGCAAACACATCAAGGAGTTCGTGCTCTCAATACACGTGGAACTGCTATCTCCAGATCTTCTCTTCTGTGCCGAAGTATGCTTAAATTTATCAATAGCCTTTTGCACTATCTTACATTTGAGGTTATTGAACCCAATTGGCACATGATGTATACTAGACTTCAGTCAGCAAATAGCATAGATGAGGTTATTCAACATCATGATTTTTTCCTCGATAAGTGTTTGAGAGAGTGTTTACTACTTTTACCTGAGTTGCTGAAGAAGGTGGAGAGGCTTAAATCCATGTGCCTACAGTATGCAGCCGCAACTCAGTGGCTTATATCATCTTCTATCGTATTACATAGTCCAGATGAATCTAAAGCTGATTCACTAGGAACTAAACAATCAAAATCAGGTCAGGCCCTGAAGTCAGCCTCCAGAAATGCAGCGGTCACTGATTCTATTCTCAAATTTGAGAAGGATTTTGATACCGAGCTTCAGAGTCTTGGATCAATCTTGAGTAGTAGCTCTCAGACAGAGCCATATTTGACCCATCTTGCAAAATGGATTCTTGGTGTCAAACTCGAACATAAGGGTTTGTGA 1992 0.4111 MTQTAAGFENLIGYYEPPVQELIVIDEVLSAMVGVEGRYISIKTLRGKKDEIINFLVDPSMDLALQELAKRIFPLCRSFLLINQFVESRSQFQNGLVNHAFSAALREFLLDYQALVAQLEHQFRLGRLSLQGLWFYCQPTLKSMQALSTVIQKASANNFSGSAVLNLLQSQAKAMAGDNAVRLLLEKMTQCASRAYMSILERWVYEGVIDDPYGEFFIAEDKSLQKESLTKDYDAKYWRQRYSLKDGIPSFLANTAGTILTTGKYLNVLRECGHNVQVPPSENSKLMSFGSNHHYLECIKAAYNFASGELVNLIKEKYDLTGKLRSIKHYLLLDQGDFLVHFMDIARDELAKKPDEVSVEKLQSLLDLALRTTAASVDPYHEGLTCIVERSSLLKRLGTFNVTEVSQRDSSNNDILEEPVSITGLETFSLSYKVHWPLSIVLSRKALTNYQLIFRFLFHCKHVDRQLCGAWQTHQGVRALNTRGTAISRSSLLCRSMLKFINSLLHYLTFEVIEPNWHMMYTRLQSANSIDEVIQHHDFFLDKCLRECLLLLPELLKKVERLKSMCLQYAAATQWLISSSIVLHSPDESKADSLGTKQSKSGQALKSASRNAAVTDSILKFEKDFDTELQSLGSILSSSSQTEPYLTHLAKWILGVKLEHKGL 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01569 663 Pfam Gamma tubulin complex component N-terminal 25 317 IPR041470 -
Vifa4g01569 663 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 13 644 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
Vifa4g01569 663 Gene3D - 320 654 IPR042241 -
Vifa4g01569 663 Pfam Gamma tubulin complex component C-terminal 320 649 IPR040457 GO:0043015
Vifa4g01569 663 FunFam Gamma-tubulin complex component 320 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01569 Vifa-Chr4 458280127 458288065 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01569 K16569 - gmx:100795585 1097.42