Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01520 ATGTCTCGTGCTCCGAATTATGAGTTTCAGGAATGGTGGAACAAACAGAGAGAAAAAGAAAATCTCGATCTATTCGAAGATAAATCCGATCAATCCTCTTCTCCTTTCATCGCCGTTGATGTCTCCGGCAGCGGCGGCGCTGGAGGAAACAACAACAGCAACTGGTCAGATCCGTCGGTGAGAAAAGAGCGTACACGAAGCGCGCGGCAGTTATCATGGGTTTGTTTGTTAAAGTTTCAACAAATGGCTTCAACCGTCGGGTTTTTATCCAACGGTTTACTTCACCTTGTCCGAACGGCGAATCGGCGGATTTCGTCGCACAATTCGCCGGCGGATTCTTCGTCGTCGCGGCTTTATAGAGCAATCAGGGTGTTTTTGATTGTGGTGATTGCGTTGTTAGGGTTTGAGCTGGTTGCTTATTTTAAAGGCTGGCATTTTCGGCCGCCGTCGGTTGGGTCGGCTGACGTGTTGGGATTGGTTGGGGAGTTTTATGCAAGGTGGATTGATATTCGGGCGAATTATTTGGCGCCGCCGTTGCAGTTGTTGACGAATATGTGTATTTTGTTGTTCATTGTGCAGTCGGTGGATAGGATTGTTTTGATTTTGGGGTGTTTTTGGATCAAGTTCAGGAGGATTAGGCCTGTGGCAAGTGTGGATTATGATAAGAATGCTGAGAGAGTCGAGGACTATCCAATGGTTTTGGTTCAGATTCCTATGTGCAATGAGAGGGAGGTTTACCATCAATCCATTGCGGCGGTAAGTATCCTGGACTGGCCAAAGGAGAGATTGCTTGTACAAGTTCTTGATGATTCGGATGAAGCGGATATTCAAAACCTCATCAAGGCAGAAGTGCATAAATGGCAACAAAGGGGCGTTCGGATTATATATAGACATAGGCTTATACGCACAGGATACAAGGCGGGGAATCTTAAATCTGCAATGGGTTGCGATTATGTTAAGGATTATGAGTTTGTGGCAATATTTGATGCTGATTTCCAGCCAACACCAGATTTCTTAAAGAAGACAGTACCTTATTTCAAGGGAAGGGATGATTTGGCATTAGTCCAGGCAAGATGGGCATTTGTAAACAAGGATGAGAACTTGCTTACAAGATTACAGAATATCAATTTATCTTTCCACTTTGAGGTTGAACAACAGGTGAATGGTATCTTCATTAACTTCTTTGGTTTCAATGGAACTGCTGGTGTCTGGAGAATAAAAGCCCTAGAGGAGAGTGGTGGCTGGTTAGAGCGAACAACTGTCGAGGACATGGACATTGCTGTTCGTGCTCATCTATGTGGATGGAAGTTTATTTTTCTCAATGACGTTAAGTGCCTCTGTGAGCTTCCAGAGACATATGAGGCCTATAAAAAACAACAGCACCGCTGGCATTCTGGTCCAATGCAATTGTTTCGTTTGTGTTTTTTTGATGTACTTCGTTCAAAGGTTAGTTGGGCAAAGAAGGCTAATTTAATATTCCTTTTCTTCCTCCTGAGGAAGCTTATTCTGCCATTTTATTCGTTCACCCTCTTCTGCATCATTCTTCCATTGACCATGTTCCTTCCAGAAGCTGTGCTCCCAGCCTGGGTTGTTTGTTACATTCCTGGAGTCATGTCTATCCTAGGTGTTCTTCCAGCTCCACGGTCATTTCCATTTATAGTACCATATCTTCTATTCGAGAACACTATGTCAGTAACAAAATTCAATGCAATGATATCTGGGTTATTTCGCTTCGGAAGTTCTTACGAATGGGTGGTTACAAAAAAGTTGGGAAGATCATCGGAGACAGATTTGGTTGCCTTCGAAAAGGAATCTGATCCTCTAATGCGGTCACATAGTCTTCATCGATCTTCCTCAGATTCAGGCATTGAAGAACTAAGCAAACTTGAACTCTCAAAATTAGCTCCAAAGACCAAGAAAAACCGTCTCTACAGGAAAGAACTTGCTCTTGCATTTATTTTGTTAACTGCCTCAGTTAGAAGCTTACTATCTGCTCAAGGAATTCACTTCTACTTCCTATTATTTCAAGGGATAAGTTTTCTGGTCGTTGGTCTTGATTTAATCGGAGAGCAGGTTAGTTAA 2082 0.4308 MSRAPNYEFQEWWNKQREKENLDLFEDKSDQSSSPFIAVDVSGSGGAGGNNNSNWSDPSVRKERTRSARQLSWVCLLKFQQMASTVGFLSNGLLHLVRTANRRISSHNSPADSSSSRLYRAIRVFLIVVIALLGFELVAYFKGWHFRPPSVGSADVLGLVGEFYARWIDIRANYLAPPLQLLTNMCILLFIVQSVDRIVLILGCFWIKFRRIRPVASVDYDKNAERVEDYPMVLVQIPMCNEREVYHQSIAAVSILDWPKERLLVQVLDDSDEADIQNLIKAEVHKWQQRGVRIIYRHRLIRTGYKAGNLKSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTVPYFKGRDDLALVQARWAFVNKDENLLTRLQNINLSFHFEVEQQVNGIFINFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLCGWKFIFLNDVKCLCELPETYEAYKKQQHRWHSGPMQLFRLCFFDVLRSKVSWAKKANLIFLFFLLRKLILPFYSFTLFCIILPLTMFLPEAVLPAWVVCYIPGVMSILGVLPAPRSFPFIVPYLLFENTMSVTKFNAMISGLFRFGSSYEWVVTKKLGRSSETDLVAFEKESDPLMRSHSLHRSSSDSGIEELSKLELSKLAPKTKKNRLYRKELALAFILLTASVRSLLSAQGIHFYFLLFQGISFLVVGLDLIGEQVS 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01520 693 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 222 449 IPR029044 -
Vifa4g01520 693 Pfam Glycosyl transferase family group 2 325 531 IPR001173 -
Vifa4g01520 693 SUPERFAMILY Nucleotide-diphospho-sugar transferases 230 510 IPR029044 -
Vifa4g01520 693 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 166 690 - -
Vifa4g01520 693 MobiDBLite consensus disorder prediction 42 58 - -
Vifa4g01520 693 MobiDBLite consensus disorder prediction 42 61 - -
Vifa4g01520 693 FunFam probable xyloglucan glycosyltransferase 5 224 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01520 Vifa-Chr4 448583064 448587770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01520 1 693 Miscellaneous Gene Families AT3G07330 74.462 0.0 1058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01520 - - gmx:100801779 1120.53