Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01513 ATGGTTGTGGCTCTGATTTCTCTACTTATCTTCTCCTTATTCATCACATCAAGTGGAGAAATCTCAGAACAACCTGGAGTAAACTATGGACAACTAGGTAACAATCTTCCAACACCAACAACCTCAGTGTCTCTAATCCAAAACCTCAAAGCCAAACGTGTCAAAATCTATGACACAAATCCAGAAATCCTTAAAGCCCTCGAAAACACTGGACTCCAAGTTTCAATCATGTTACCAAATCAACTCATTACCAACATATCCTTAAACCAAACATTCTCAAACCAATGGATCCAATCAAACCTCGTACCATTTTACCCAAAAACACTCATTCGTTATCTTCTCGTCGGTAACGAACTCATTTCCTCAACAACAAACGAAACATGGCCTCACATTGTACCTGCGATGCACCGAATCAAACACTCCTTATCTATCTTTGGTTTGCATAAAATCAAAGTTGGAACCACTTCAGCAATGGATGTTTTACAAGCATCATTTCCACCTTCAAATGGAACTTTTAGAAATGACATTGCGTTTAGTGTTATTAAACCCATGTTGGAGTTCTTACATGTTACCAACTCTTATTTCTTCTTGGATGTTTATCCGTTTTTTGCTTGGACTTCAGATCCTATTAATATTAACTTGAATTATGCTCTTTTTGAATCGGATAATATCACGGTTACGGATCCGAATACAGGTTTGGTTTATACTAATTTATTTGATCAAATGGTGGATGCGGTTTATTATGCAATGGAGCGATTAGGATTTCCGGGTATTCGGATCTTTATTGCTGAAACGGGTTGGCCTAATGGTGGTGACTTGGACCAAATCGGTGCGAATATTCACAATGCTGCAACATATAATAGAAACTTTGTGAAGAAACTTACGAAAAAACCTCATATAGGGACACCGGCTCGACCTGGTTCAGTTCTACCATCATTTATTTTTGCTTTGTTTAATGAAAACTTGAAACCGGGTTTGGGGACAGAGCGTCACTTTGGGTTATTATATCCGAACGGGTCAAATATTTATGAGATTGACCTTTCTGGCAAGACTCTAGAGTCGGAGTTTAAGACATTGCCCCCAGCGAATGATTATAAAGGAAAGGCATGGTGCGTGGTGGCGGAGGGAGCGAATGAGACGGCCGTTGTGGAGGCATTGTCATACGCTTGCTCACAAGGAAACCAAACATGTGATTCGGTTCAACCCGGGAAACCGTGTTTTGAACCCAATTCAGTGGTGGATCATGCTAGTTATGCGTTTAGTTCTTATTGGGCTCAGTTTAGACATGTGGGTGGAACTTGTAATTTCAATGGTCTTGCCATCCAAATTGCAAAGGATCCAAGTTATGGAGCTTGCAAGTACCAAAGTGTGACTCTTTGA 1380 0.4014 MVVALISLLIFSLFITSSGEISEQPGVNYGQLGNNLPTPTTSVSLIQNLKAKRVKIYDTNPEILKALENTGLQVSIMLPNQLITNISLNQTFSNQWIQSNLVPFYPKTLIRYLLVGNELISSTTNETWPHIVPAMHRIKHSLSIFGLHKIKVGTTSAMDVLQASFPPSNGTFRNDIAFSVIKPMLEFLHVTNSYFFLDVYPFFAWTSDPININLNYALFESDNITVTDPNTGLVYTNLFDQMVDAVYYAMERLGFPGIRIFIAETGWPNGGDLDQIGANIHNAATYNRNFVKKLTKKPHIGTPARPGSVLPSFIFALFNENLKPGLGTERHFGLLYPNGSNIYEIDLSGKTLESEFKTLPPANDYKGKAWCVVAEGANETAVVEALSYACSQGNQTCDSVQPGKPCFEPNSVVDHASYAFSSYWAQFRHVGGTCNFNGLAIQIAKDPSYGACKYQSVTL 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01513 459 SMART X8_cls 369 454 IPR012946 -
Vifa4g01513 459 ProSitePatterns Glycosyl hydrolases family 17 signature. 258 271 IPR000490 GO:0004553|GO:0005975
Vifa4g01513 459 Gene3D Glycosidases 24 354 - -
Vifa4g01513 459 FunFam Glucan endo-1,3-beta-glucosidase 14 23 352 - -
Vifa4g01513 459 FunFam Glucan endo-1,3-beta-glucosidase 4 364 458 - -
Vifa4g01513 459 Pfam X8 domain 370 440 IPR012946 -
Vifa4g01513 459 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 25 440 IPR044965 GO:0004553|GO:0005975
Vifa4g01513 459 SUPERFAMILY (Trans)glycosidases 26 346 IPR017853 -
Vifa4g01513 459 Gene3D - 364 458 - -
Vifa4g01513 459 Pfam Glycosyl hydrolases family 17 26 346 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01513 Vifa-Chr4 447643511 447645273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01513 21 459 Glycoside Hydrolase AT3G23770 53.708 1.19e-178 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01513 - - ccaj:109805358 709.909