Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01504 ATGGGATCAAAGAAGGATTTGGGAGTGAGTATTCTGAGTGGATGGTTGAGTAGAAGATCAATGAAAGTGAAGATTGGTTTGGGGATATTGCTTGCTTTTTGTGGTGTGGTGATTCTAAGGCATACTATCACAGATCCTCATTTTTTCTACATAGCCTCTGGAACAGTTCATGTTGCTGGTCTTGTTGTTCTTGTATACAAGCTCTTTGTTAATAAGACATGTTCTGGTTTGTCCCTCAAGTTCCAAGAGGTCAATGCTTTATTCCTAGCAACAAGATTAGGCTGCAGCTTCTACATGGAAGCAGACTATCGCACTGTGTTTGATCTATTATATTTCTTGTTAACATTAATGGTTGTTTGGTTGATGAGATTCAGACTCAAATCTACCTATATCAAAGAGTTTGACACAATGTGGATATCCCTTTTGGTGGTGCCTTCCGCAATTCTAGCAGTACTAGTAAAACCACAGACACCTTATGTATGGCTTTCTCGAGTTGTTTTCGCATTCACTTTGTATGTCGAAACTGTTTCAGTTCTTCCTCAAATTCGTTACATGCAAAATGCAAAGATGGTTGAAACATTCACGGGATATTATGTATTTGCTCTTGGTATTTCAAGATTCTTTGCATTAGCTTATTGGATTATTCACGTTTATGAAACTGGAGGTAGATATCTATTTTTCTTTGGCTATGGCTATTTCTGGATGGTGGTTCTTCAAGTATTGGAGTTGGTTCAATCTTTCATCTTGGCAGATTTCTGTTACTATTACATCAAGAGCTTCATGCAAGGTCAACTTTTGAGGAAGATGCCTGTTTAA 816 0.3775 MGSKKDLGVSILSGWLSRRSMKVKIGLGILLAFCGVVILRHTITDPHFFYIASGTVHVAGLVVLVYKLFVNKTCSGLSLKFQEVNALFLATRLGCSFYMEADYRTVFDLLYFLLTLMVVWLMRFRLKSTYIKEFDTMWISLLVVPSAILAVLVKPQTPYVWLSRVVFAFTLYVETVSVLPQIRYMQNAKMVETFTGYYVFALGISRFFALAYWIIHVYETGGRYLFFFGYGYFWMVVLQVLELVQSFILADFCYYYIKSFMQGQLLRKMPV 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01504 271 Pfam ER lumen protein retaining receptor 73 215 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vifa4g01504 271 PRINTS ER lumen protein retaining receptor signature 189 203 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vifa4g01504 271 PRINTS ER lumen protein retaining receptor signature 49 68 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vifa4g01504 271 PRINTS ER lumen protein retaining receptor signature 76 96 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vifa4g01504 271 PRINTS ER lumen protein retaining receptor signature 203 221 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vifa4g01504 271 PRINTS ER lumen protein retaining receptor signature 167 187 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vifa4g01504 271 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 48 259 IPR000133 GO:0006621|GO:0016020|GO:0046923
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01504 Vifa-Chr4 444718710 444726070 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01504 1 271 Miscellaneous Gene Families AT3G25160 52.941 1.03e-102 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01504 - K10949 gmx:100790733 327.405