Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01464 ATGAGCAGCACTACTCTACCTTCTGTTCCACCACAAGATGCGTGGACTCTCACTACCCACAAACTCCTCCATCGCTGGATTCCCCTTTCCCTCTCCCACCAGTCAACGATCCCGATTTCGATATCGAGAGTTAACCAAGTTGATGCTGCAAGATTGGACATTGAAATGTCAGCCATGTTGAAAGAACAGTTGGTTAAAGTGTTTACTTTGATGAAGCCAGGAATGCTATTTCAGTATGAAGCTGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGAGATTCTCAATTTGGGTGGATAAGCCAACTCCTGGCATTGCTCTCATGAATTTGAGGTATAGAGATGAACGTGCAGTTGAATCAAGGGGTAAAGTAAGAACTGGTCTGGAGGGACCTGGACTCACGGTTGCTCAGAAGCTTTGGTATTGTATTGCCACTGTTGGTGGTCAGTATATTTGGGCTCGCTTACAATCATTCTCTGCATTTCGTAGGTGGGGTGATACTGAGCAGAGACCATTGGCACGGCGGTTATGGATCTTGATACAAAGAATAGAAGGGATTTATAGAGCTGCTTCATTTGGAAACCTGTTGATATTTCTTTGCACGGGAAGATATCGAAATCTTATCGAAAGAGTTTTACGGGCTAGGCTTGTATATGGGAGCCCAAATATGAACCGGGCTGTTAGCTTTGAGTATATGAACCGACAATTAGTTTGGAATGAATTCTCGGAAATGTTATTGTTGCTTCTTCCTCTTCTTAATTCATCATCGATGAGAAATCTCCTTCGCCCTTTTTCCAAGGATAAATCATCAAGTTCGGCTGAGGATAGCACTGCATGTCCCATTTGCCAGGCTACTCCAGTCATTCCTTTTGTCGCTTTACCTTGTCAGCACAGATATTGTTACTACTGTCTGCGGACACGATGCGCTGCTGCCTCATCATTTAGGTGTTCTAGGTGTAGTGAGCCAGTTGTTGCTATGCAACGCCATGGTGGTGCCTCCACGGAGTAA 1008 0.4444 MSSTTLPSVPPQDAWTLTTHKLLHRWIPLSLSHQSTIPISISRVNQVDAARLDIEMSAMLKEQLVKVFTLMKPGMLFQYEAELDAFLEFLIWRFSIWVDKPTPGIALMNLRYRDERAVESRGKVRTGLEGPGLTVAQKLWYCIATVGGQYIWARLQSFSAFRRWGDTEQRPLARRLWILIQRIEGIYRAASFGNLLIFLCTGRYRNLIERVLRARLVYGSPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSMRNLLRPFSKDKSSSSAEDSTACPICQATPVIPFVALPCQHRYCYYCLRTRCAAASSFRCSRCSEPVVAMQRHGGASTE 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01464 335 Pfam Zinc finger, C3HC4 type (RING finger) 279 319 IPR018957 GO:0046872
Vifa4g01464 335 Pfam Pex2 / Pex12 amino terminal region 55 257 IPR006845 -
Vifa4g01464 335 SUPERFAMILY RING/U-box 273 325 - -
Vifa4g01464 335 ProSitePatterns Zinc finger RING-type signature. 295 304 IPR017907 -
Vifa4g01464 335 ProSiteProfiles Zinc finger RING-type profile. 279 320 IPR001841 -
Vifa4g01464 335 PANTHER PEROXISOME BIOGENESIS FACTOR 2 2 334 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Vifa4g01464 335 CDD RING-HC_PEX2 276 323 IPR045859 -
Vifa4g01464 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 331 IPR013083 -
Vifa4g01464 335 SMART ring_2 279 319 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01464 K06664 - gmx:100805856 578.556