Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01446 ATGAGTGAGCAGAAAACAGCGTCTATAGAAAGCAGTGGCACACTCACAATGAGTGGCCCCCTCGTTGCAGCCACCGAGAAAACCATCCGTCGCCGGAGAACCGAGGCGATGCAGCTGATTCTTCGAGCTTTGTCTATGGCAACCTCTGTTGTTTCTCTCTCATTAATGATCACAGCCCAACAAAACAGCTCTGTCTCTATCTACGGATTTCGTTTACCTGTCCATTCCAAATGGTCTTTCTCTCTTTCTTACGAATTTGTTGTTGGAGTTTGTGTAGCTGTTGCAGCTCATTCCTTGCTGCAACTACTCATTGGCACATCAAGGTTTCTTAGGGCTTCTTCTGTGATTCCTTCAAGAACTCATGCATGGGTTCTTTTTGCTGGGGATCAGGCTTTTGCTTATGCATTGATGAGTGCGGGATCTGCAGCATCTGGAGTAACCAATCTAAATCGGACAGGAATTAGACATACACCTCTTCCAAATTTGTGCAAACCTTTGCACATGTTTTGTGACCATGTTGCCATCTCAATAGCTTTCACTTTCATCAGCTGTTTCTTGCTTGCCACATCTGCTGTCCATGATGTAATATGGCTCACTCAACACTGA 606 0.4521 MSEQKTASIESSGTLTMSGPLVAATEKTIRRRRTEAMQLILRALSMATSVVSLSLMITAQQNSSVSIYGFRLPVHSKWSFSLSYEFVVGVCVAVAAHSLLQLLIGTSRFLRASSVIPSRTHAWVLFAGDQAFAYALMSAGSAASGVTNLNRTGIRHTPLPNLCKPLHMFCDHVAISIAFTFISCFLLATSAVHDVIWLTQH 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01446 201 NCBIfam plant integral membrane protein TIGR01569 39 190 IPR006459 -
Vifa4g01446 201 Pfam Casparian strip membrane protein domain 32 186 IPR006702 -
Vifa4g01446 201 PANTHER CASP-LIKE PROTEIN 4A4 29 198 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01446 26 199 Miscellaneous Gene Families AT1G79780 48.023 4.07e-52 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01446 - - pvu:PHAVU_010G146500g 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01446 4 428097991 428100057 Vifa4g01446 4 428097991 428100057 ECH