Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01421 ATGGGGAGTTCTGAAAGGATGGGGGCATCGTCGAAGCCTGCGAACGCTCCTTCGCAGGCGGCGCCGGAGAAACAATATGGTGTCACCAAGGCTATTTCTATGGCTGGCCCAACCGTTGCTGATTTGAAACGTACTAAGAAATTGGAGAAGTTTTTGGCTGATTCTGGGCTTTATGAGGGCAATGAGGAGGCTTCCAAGAGATTAGAGGTCCTTCAGCGGCTTGAACAGATTGTAAAGAATTGGGTAAAGCAGCTAACTCGTTTGAAGGGGTACACTGATCAAATGGTTCAAGATGCAAATGCTCTCATAGTCACTTTTGGTTCTTACCGGCTTGGCGTTCATGGTCCTGGTGCTGACCTAGATACACTCTGTATTGGGCCATCCTATGTAAACCGAGAGCATGATTTTTTCTTCACATTGCATGAGATCCTAGCTTGTGTGGATGAAGTTACTGAACTGCAACCAATTCCGGACGCTCATGTCCCAGTTATGAGGTTCAAGTTTGATGGAATATCGATCGACCTTCTTTATGCTAGTATTTCTCGTTTGGTTGTACCTGAAGAATTGGACATATCTGATGTCTCTGTTCTGCACAATGTTGACGAGCCTACAGTTCGAAGTTTGAATGGTTGTAGGGTTGCAGATCAAATTCTAAAGCTTGTTCCAAATGTTGAGTACTTTCGAACAACACTCCGCTGCTTGAAGTATTGGGCCAAAAGACGAGGTCTTTATTCCAATGTGACAGGTTTTCTTGGTGGTGTGAACTGGGCACTTCTTGTAGCTCGAGTGTGCCAGATGTATCCAAATGCAGTTCCGAGCATGCTTGTCTCCCGGTTCTTTAGGGTATATACACAGTGGAGGTGGCCAAATCCTGTCATGTTATGTCCAATCGAAGAGAACGAGCTTGGGTTTTCATTGTGGCACCCTCGCAAAAATCCTCGTGATCGAACCCATCTTATGCCAATCATCACTCCTGCCTATCCATGCATGAATTCAAGTTATAATGTTTCTACAAGCACCCTTCGTGTTATGATGGAGCAGTTCGAACATGGCAACAAAATCTGTGGGGATATAGATATGAATAAAAGCTGCTGGAGGGCTCTGTTTGAACCATACCTTTTCTTTGAAGGCTACAAAAACTTCTTGCAAATTGACATAGTTGCTGCTGATGTTGATGACTTGCGGAATTGGAAGGGTTGGGTGGAATCACGCCTTCGACAGCTGACTTTGATGATTGAACGTGATACTTTTGGGAAGTTGCAGTGTCATCCCTATCCTCGGGAGTATATTGACCCTTCAAAGAAATGTTTACATAATGCTTTCTTCATGGGTCTTCAGAGGAAAGAGGGGGAAGTTGTTCAAGAAGGCTGTCAGTTTGATATACGTGCGACTGTTGAAGAATTTCGGCATTCTGTTAATAGCTACATGTTCTGGAAACCTGGAATGGATATTCATGTTTCGCACATCCGTAGAAGGCAAATCCCATGCTATGTGTTTCCAGATGGTTTAAAACGATCTCGGCCATCTAGGTCAACAGCACAACTGAAGAAGTCTCCTACATCATTTCATGGAAATGAGGTTTCTCCGACTGAACAGGGTGAGAAGAACTTTAAGAGGAAGCATGATAACAGAGGGGTGAGGCAGAATGTTGTACTGAAAAAGCATTGTGTTAGTCCTCCTGTGGATAGCTTGACAGGAGGCAATCCATGCCTCCATGCTGGTGACATGTCCGTCCATGCCGTATCTGATTGTCAAGAGTTGAAAAATGTTGAGAGGACGAGTTTGTCCAATTGTGAGCAAGATCAGTTTGATAGACGAATGTCTCCAGAATCTGGGTCTGAATCTGCATCAAATTCAAGTGGGGTTACATCTGTTTCAAGTAATGGTGGTTCTTCTCCTGAAGATGTTGGGTCTGCACCGGTGGTAGGTTTTATTGATGATAGTGCCATGGCTGTTGAGGCAACGACCAGTGGTAGATTTGAAGATATGACTTACATGGAAGATTCTGTAAAACTTGGAAACAATACACTGGCTGGTAGAAATAATGACGTATTACAGAAAGAGCTACAGGCACAGTTGGAGCCAATTGCAATGTCAGGGATGTTTCTTGATGCTAAGGGAGCCTTTGATAAAGATACCGTGCAAAAGACAGTGATAAGGAGACTGAGTTTAACATCGACAGCGTAA 2187 0.4408 MGSSERMGASSKPANAPSQAAPEKQYGVTKAISMAGPTVADLKRTKKLEKFLADSGLYEGNEEASKRLEVLQRLEQIVKNWVKQLTRLKGYTDQMVQDANALIVTFGSYRLGVHGPGADLDTLCIGPSYVNREHDFFFTLHEILACVDEVTELQPIPDAHVPVMRFKFDGISIDLLYASISRLVVPEELDISDVSVLHNVDEPTVRSLNGCRVADQILKLVPNVEYFRTTLRCLKYWAKRRGLYSNVTGFLGGVNWALLVARVCQMYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSLWHPRKNPRDRTHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFEHGNKICGDIDMNKSCWRALFEPYLFFEGYKNFLQIDIVAADVDDLRNWKGWVESRLRQLTLMIERDTFGKLQCHPYPREYIDPSKKCLHNAFFMGLQRKEGEVVQEGCQFDIRATVEEFRHSVNSYMFWKPGMDIHVSHIRRRQIPCYVFPDGLKRSRPSRSTAQLKKSPTSFHGNEVSPTEQGEKNFKRKHDNRGVRQNVVLKKHCVSPPVDSLTGGNPCLHAGDMSVHAVSDCQELKNVERTSLSNCEQDQFDRRMSPESGSESASNSSGVTSVSSNGGSSPEDVGSAPVVGFIDDSAMAVEATTSGRFEDMTYMEDSVKLGNNTLAGRNNDVLQKELQAQLEPIAMSGMFLDAKGAFDKDTVQKTVIRRLSLTSTA 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01421 728 CDD NT_PAP_TUTase 66 221 - -
Vifa4g01421 728 SUPERFAMILY PAP/OAS1 substrate-binding domain 222 371 - -
Vifa4g01421 728 FunFam Nuclear poly(A) polymerase 4 373 489 - -
Vifa4g01421 728 MobiDBLite consensus disorder prediction 595 640 - -
Vifa4g01421 728 Pfam Poly(A) polymerase predicted RNA binding domain 374 431 IPR007010 GO:0003723|GO:0043631
Vifa4g01421 728 Pfam Poly(A) polymerase central domain 27 371 IPR007012 GO:0043631|GO:1990817
Vifa4g01421 728 MobiDBLite consensus disorder prediction 506 544 - -
Vifa4g01421 728 Gene3D - 27 369 - -
Vifa4g01421 728 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 374 500 IPR011068 GO:0003723|GO:0016779|GO:0031123
Vifa4g01421 728 MobiDBLite consensus disorder prediction 609 634 - -
Vifa4g01421 728 Pfam Nucleotidyltransferase domain 95 167 IPR002934 GO:0016779
Vifa4g01421 728 Gene3D Beta Polymerase, domain 2 59 215 IPR043519 -
Vifa4g01421 728 FunFam Putative poly(A) polymerase gamma 191 369 - -
Vifa4g01421 728 PANTHER POLY A POLYMERASE 13 538 - -
Vifa4g01421 728 MobiDBLite consensus disorder prediction 507 531 - -
Vifa4g01421 728 MobiDBLite consensus disorder prediction 1 18 - -
Vifa4g01421 728 MobiDBLite consensus disorder prediction 1 25 - -
Vifa4g01421 728 FunFam Poly(A) polymerase alpha, putative 59 215 - -
Vifa4g01421 728 SUPERFAMILY Nucleotidyltransferase 24 220 IPR043519 -
Vifa4g01421 728 Gene3D Poly(A) polymerase predicted RNA binding domain 374 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01421 Vifa-Chr4 421764199 421768114 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01421 K14376 - gmx:100783237 1009.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01421 4 421764199 421768114 Vifa4g01421 4 421764199 421768114 ECH