Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa4g01406 | ATGAAAACAAACATTCGATTTCACCAATTTTCAACTTCAACATTAATCCAACCCCATCAAAAAAACCAAACATTTCCCAAAAGAACATATCTACCTATACCTCACCGAACAATTCCACAACCCAAAGGACAAGACCTAGATTTCATCAACGTTTGTCACAGTCACCTAATCCACTCTCAATGGGAAAAACTCAACCCTTTATCAAAAACCCTAACCCCATTCACAATCCAACACATTCTCCTAAAACTCCAGAACGACCACGTTCTATCTCTCAAATTCTTCAACTGGGTTCATACCCATAACCCTAATTCTCACACCCTTCACACCCATTCCTTCCTCCTTCACATTCTCACCAAAAATCGAAACTTTAAAACAGCTCAATCAATTTTCAGTAGAATCATCACAGATTCTAATCTCTTTGAGTCATTGCTTCATTCATACCGTCTCTGCAATTCTTCACCCCTTGTTTTTGATGCCCTTTTCAAGACATTTGCTCACATGAACAAATTGAGAAATGCCACTGATACTTTTGTTAGAATGAAGGAATATGGATTCTTTCCAGCTATTGAATCTTGCAATGCTTTTATGAGTTCAATGCTTTACCTTAAGAGACCGGAATTGGTTTTGTCGTTTTATCGTCAAATGCGGAAAAGTTTGATTTCGCCTAATGTTTACACTCTGAATATGGTTGTTTCTGCTTGTTGTAAATTAGGGGAATTGAATAAAGGTTATGAGATTTTGGAGAAGATGAAGGATATGGGGTTGAGTCCTAATGTTGTTACTTTCAATGCATTGATTTCTGGTTATTGTAATAAGGGTTTACTTGGTTTGGCTTTAAAGGTTAAAACTTTGATGATGGGGAATAATGGGGTGTTACCAAATGTGGTTACTTTTAACACTCTTATTAATGGGTTTTGTAAAGAGGGGAAAATGCATGAAGCTAGTAGGGTTTTTAGTGAGATGAAGTTGGCTAATGTGGCTCCTAATGTTGTGACTTACAACACTTTGATTAATGGGTTTGGTCAAGTTGGTAATAGTGAAATGGGTGTTATGCTTTTTGAAGAGATGGAGAAGAGTAAGGTGAAAGCTGATATTTTGACTTATAATGGTTTGATTTTGGGGCTTTGTAAAGAAGGGAAGACTAAAAAGGCTGCTTATATGGTTAAGGAGCTTGATAAGGAGAGTTTGGTGCCAAATGCTTCTACGTTTTCTGCTCTTATTGCTGGACAGTGTGTTAGGAAGAATTCTGAACGTGCTTTTCTTGTTTATAGAAGCATGGTGAGGAGTGGTTTTAGTCCTGATGAGAGTACTTTTCGGATGTTGGTGTCAGCTTTTTGTAAGAATGAAGATTTTGATGGAGCTGTGCAAGTTTTGAGGGACATGTTGGATAGATTCATGACTCCTGATTCTAGTATTTTGTCTGAGGTTTGTAGTGGACTTTGCAAGTGTGGGAGAAAACAGTTTGCATTGATGCTGTGTACTGAGATGGAAACTAAGCGATTAATGCCACAAGGTTTTGACAAAGAAAATATAGTCATCACTAGTCATGAAAATGAAACAAGCATTTGA | 1569 | 0.3722 | MKTNIRFHQFSTSTLIQPHQKNQTFPKRTYLPIPHRTIPQPKGQDLDFINVCHSHLIHSQWEKLNPLSKTLTPFTIQHILLKLQNDHVLSLKFFNWVHTHNPNSHTLHTHSFLLHILTKNRNFKTAQSIFSRIITDSNLFESLLHSYRLCNSSPLVFDALFKTFAHMNKLRNATDTFVRMKEYGFFPAIESCNAFMSSMLYLKRPELVLSFYRQMRKSLISPNVYTLNMVVSACCKLGELNKGYEILEKMKDMGLSPNVVTFNALISGYCNKGLLGLALKVKTLMMGNNGVLPNVVTFNTLINGFCKEGKMHEASRVFSEMKLANVAPNVVTYNTLINGFGQVGNSEMGVMLFEEMEKSKVKADILTYNGLILGLCKEGKTKKAAYMVKELDKESLVPNASTFSALIAGQCVRKNSERAFLVYRSMVRSGFSPDESTFRMLVSAFCKNEDFDGAVQVLRDMLDRFMTPDSSILSEVCSGLCKCGRKQFALMLCTEMETKRLMPQGFDKENIVITSHENETSI | 522 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa4g01406 | 522 | PANTHER | PPR_LONG DOMAIN-CONTAINING PROTEIN | 150 | 448 | - | - | |
| Vifa4g01406 | 522 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 153 | 187 | IPR002885 | - | |
| Vifa4g01406 | 522 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 399 | 433 | IPR002885 | - | |
| Vifa4g01406 | 522 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 258 | 293 | IPR002885 | - | |
| Vifa4g01406 | 522 | NCBIfam | pentatricopeptide repeat | 402 | 435 | IPR002885 | - | |
| Vifa4g01406 | 522 | NCBIfam | pentatricopeptide repeat | 331 | 364 | IPR002885 | - | |
| Vifa4g01406 | 522 | NCBIfam | pentatricopeptide repeat | 225 | 259 | IPR002885 | - | |
| Vifa4g01406 | 522 | NCBIfam | pentatricopeptide repeat | 260 | 295 | IPR002885 | - | |
| Vifa4g01406 | 522 | NCBIfam | pentatricopeptide repeat | 437 | 469 | IPR002885 | - | |
| Vifa4g01406 | 522 | NCBIfam | pentatricopeptide repeat | 367 | 400 | IPR002885 | - | |
| Vifa4g01406 | 522 | NCBIfam | pentatricopeptide repeat | 296 | 330 | IPR002885 | - | |
| Vifa4g01406 | 522 | Gene3D | Tetratricopeptide repeat domain | 389 | 516 | IPR011990 | GO:0005515 | |
| Vifa4g01406 | 522 | Pfam | PPR repeat | 430 | 461 | IPR002885 | - | |
| Vifa4g01406 | 522 | Gene3D | Tetratricopeptide repeat domain | 274 | 385 | IPR011990 | GO:0005515 | |
| Vifa4g01406 | 522 | Gene3D | Tetratricopeptide repeat domain | 137 | 273 | IPR011990 | GO:0005515 | |
| Vifa4g01406 | 522 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 364 | 398 | IPR002885 | - | |
| Vifa4g01406 | 522 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 294 | 328 | IPR002885 | - | |
| Vifa4g01406 | 522 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 223 | 257 | IPR002885 | - | |
| Vifa4g01406 | 522 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 434 | 468 | IPR002885 | - | |
| Vifa4g01406 | 522 | Pfam | PPR repeat family | 364 | 411 | IPR002885 | - | |
| Vifa4g01406 | 522 | Pfam | PPR repeat family | 222 | 271 | IPR002885 | - | |
| Vifa4g01406 | 522 | Pfam | PPR repeat family | 293 | 340 | IPR002885 | - | |
| Vifa4g01406 | 522 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 329 | 363 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa4g01406 | 212 | 512 | Glycosyltransferase | AT1G05670 | 29.568 | 2.72e-41 | 156 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa4g01406 | - | - | psat:127076447 | 964.911 |