Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01394 ATGTCTTGTTCTTCCTTCAAATTCAAATGCTTCCAATATTTTTTCATCTTGCATGTCTTTGCTTCAACATCCATCTTGTTATCATCAACACATAATTCCTCAATCAACAATTTTCTAGAGATTGCCAACAGTTCTGAGGTTTTTGATTGGATGATCAGTATCAGAAGGAAGATTCATGAGAATCCTGAACTGTGTTATGAAGAATTTGAGACAAGTAAACTGATAAGATCAGAATTGGATAAAATGGATGTACCTTATAAACATCCAGTTGCAATCACTGGTGTTATTGGTTTCATAGGAACTGGTTTGTCTCCTTTTGTTGCTTTAAGAGCTGATATGGATGCTCTTCCTATGCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTAGATGGAAAGATGCATGCTTGTGGTCATGATGCTCATGTTACCATGCTACTTGCTGCTGCAAAGATTCTCAAACACCATGAAAAAGAAATACAAGGAACTGTTGTTCTTGTTTTCCAACCAGCAGAAGAAGGAGGTGGAGGGGCTAAGAAAATTTTAGATGCTGGTGCATTAGAAAATGTAACAGCTATTTTTGGATTGCATATTGCTCCTGACATACCAATAGGTGAAGTGGCCTCTAGGTCTGGTCCAATAATGGCGGGAAGTGGCCGCTTTGAAGCAAAAATAAGTGGAAAAGGAGGTCATGCAGCTATTCCTCAACACTCTATAGATCCCATTTTGGCAGCTTCCAATGTGGTTATTAGCTTACAACACCTTGTGTCTCGTGAAGCCGATCCTTTAGATTCACAGGTTGTGACAGTTACAAAGTTCCAAGGAGGTAGCGCATTCAATGTCATTCCAGATTATGTCATAATTGGTGGCACCTACCGAGCTTTTTCTAAACAAAGCTTTAATCAACTAAGAAAGCGAATTGAACAGGTTATAATTGGGCAAGCTGCAGTGCATAGGTGCAATGCAACTATAGATTTCCTTGATGAAGTGAGACCTAACTATCCTCCAACTGTAAACAATGGTGACTTGCATGAGCATTTTGTGAATGTTGCAGTGAATATGCTTGGTATCAATAAAGTTAATAGTGCTGTGACACCATCCATGGCAGCTGAAGATTTTTCTTTCTATCAAAAGGTCATGCCTGGTTACTGGTTCTGGCTTGGTGTGCAGAATGCCTCACATAAACGGTTGCAGTCATTACATTCACCTTATCTCGAAATCAATGAAGATGGACTCCCATATGGAGCTGCACTTCATGCGTCATTAGCTGCTAGTTACCTTCTAAAATATCAGCAGGATGTACCTGGTGTTGAGAGAAGATATCTTGATGAATTATAG 1338 0.3969 MSCSSFKFKCFQYFFILHVFASTSILLSSTHNSSINNFLEIANSSEVFDWMISIRRKIHENPELCYEEFETSKLIRSELDKMDVPYKHPVAITGVIGFIGTGLSPFVALRADMDALPMQEMVEWEHKSKVDGKMHACGHDAHVTMLLAAAKILKHHEKEIQGTVVLVFQPAEEGGGGAKKILDAGALENVTAIFGLHIAPDIPIGEVASRSGPIMAGSGRFEAKISGKGGHAAIPQHSIDPILAASNVVISLQHLVSREADPLDSQVVTVTKFQGGSAFNVIPDYVIIGGTYRAFSKQSFNQLRKRIEQVIIGQAAVHRCNATIDFLDEVRPNYPPTVNNGDLHEHFVNVAVNMLGINKVNSAVTPSMAAEDFSFYQKVMPGYWFWLGVQNASHKRLQSLHSPYLEINEDGLPYGAALHASLAASYLLKYQQDVPGVERRYLDEL 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01394 445 Pfam Peptidase family M20/M25/M40 108 423 IPR002933 GO:0016787
Vifa4g01394 445 NCBIfam amidohydrolase 51 414 IPR017439 GO:0016787
Vifa4g01394 445 FunFam N-acetyldiaminopimelate deacetylase 216 334 - -
Vifa4g01394 445 Pfam Peptidase dimerisation domain 217 311 IPR011650 -
Vifa4g01394 445 PANTHER PEPTIDASE M20 FAMILY MEMBER 29 433 IPR017439 GO:0016787
Vifa4g01394 445 Gene3D Zn peptidases 51 411 - -
Vifa4g01394 445 SUPERFAMILY Bacterial exopeptidase dimerisation domain 217 326 IPR036264 -
Vifa4g01394 445 PIRSF Amidohydrol_AmhX 37 431 IPR017439 GO:0016787
Vifa4g01394 445 CDD M20_IAA_Hyd 51 415 IPR044757 GO:0009850|GO:0016787
Vifa4g01394 445 Gene3D - 216 334 - -
Vifa4g01394 445 SUPERFAMILY Zn-dependent exopeptidases 45 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01394 Vifa-Chr4 416277775 416279874 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01394 K21604 - gmx:121172631 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01394 4 416277775 416279874 Vifa4g01394 4 416277775 416279874 ECH