Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01388 ATGTTGCAGCCAACCACTGGAGTAGGGATGAATTCTGCAATGGATGATATGAATTTGATTCAGCAAGCACAGAGGCATCACTTGGTTGTGAGGGAGATTGGTGAAGAGATTGATTTAGAAATTGGACCTGGGGAAGATGATCCTTCATTTGGCAATGCAACACTAATTGGTGCACCGTTGCGGGAATCTTCTGCAGAAGATCATGGCGAGAGCAAGCAGATGATGGTGGTTTCTCAGCTTTCTAATGACGTTCAAGACCTGTCTCAGACTCAACAGGTGAAAAGGAAGAAAAAGGTTGTTAAGAGATGGAGAGAGGAATGGGCAGACACTTACAAATGGGCCTATGTCGATGTGAAAGACGGGACACCGAGGATTTTCTGCTCTGTCTGCAGGGAATTTGGCAGGAAACATCGAAGAAATCCTTATGGCAATGAGGGAAGTCGTAATATGCAGATGAGTGCGCTCGAGGAACACAATAATAGTTTGCTTCATAAAGAGGCTCTTCGTCTTCAATCGGCCTCCAAAGATAAAATTATGGCTGACAAGCCTGTATATGTAAAAGCGGGATCAATTCTTGAAGCTACGCTGAAAAGGGATCCTCATGAGGTTGAGTTCATTCAGGCAGTCCAGGAGGTAGTTCAAGCTCTTGAGAGAGTCATTGGGAAAAATTCTCATTATGTTAACATCATGGAGCGATTGTTGGAACCTGAACGAATGATTATTTTTCGAGTTCCATGGGTGGATGATAGGGGTGAGACACACGTTAATAGGGGGTTTCGAGTACAATTTAACCAGTCAATGGGTCCATGCAGGGGTGGCATTCGATTTCATCCATCAGTGAATTTAAGTATTACCAAATTCCTTGGCTTTGAGCAGACGTTAAAGAATGCTCTATCACCTTACAAATTAGGAGGAGCAGCTGGTGGAAGTGATTTTGATCCAAAAGGCAAAAGTGAGAATGAGATTATGCGATTTTGCCAGAGTTTCATGTGTGAGATGTATCATTACCTTGGTCCAGACAAGGACCTTCCGTCGGAGGAGATGGGCGTTGGTACTCGTGAGATGGGGTATCTTTTTGGACAGTATAGACGTCTGGTTGGTCATTTTCAGGGAACTTTTACAGGGCCAAGAATATTTTGGTCTGGCTCCAGTCTTCGACCTGAAGCTACTGGCTATGGGCTGGTTTTCTTTGCCCAGCTCATGCTAGCTGACATGAATAAAGAACTCAAAGGATTAAGATGCATAGTGAGTGGTTCTGGAAAGATTGCACTGCATGTTTTAGAAAAGCTAATTGCATATGGTGCTCTACCCATTTCAGTATCAGATTCTAGGGGATATTTGGTTGATGAAGATGGGTTTGACTACATGAAAGTACAATTTTTGAGAGACATCAAAGCTCAGCATAGAAGTTTGCGAGACTATTCAAAGACCTATGCTCGGTCCAAATATTATGATGAAGCAAAACCCTGGGTTGAAAGATATGATCTTGCATTTGCTTGTGCTACACAGAATGAGATTGATCAAGCGGATGCCATCAATTTGGTTAATTCAGGCTGTCGCATACTGATAGAAGGTTCAAACATGCCCTGTACCCCTGATGCAGTTCTAGTTCTGAGGAAAGCTAATGTTCTTGTTGCTCCTGCAATGGCTGCTGGAGCTGGAGGGGTCGTGGCTGGAGAACTTGAATTGAATCATGAGTGCAGTTTGATGAACTGGTCCCCTGAGGACTTCGAATCTAAATTACAGGAAGCAATGAAACAAACATATCAAAGAGCTATAAAAGCCGCAACTGATTTCGGTTATCAAAAGGAAAGCCCCGAGGCTTTGGTACATGGAGCAGTTATCTCTGCGTTTCTTACTATTGCTCAAGCCATGACTGATCAAGGCTGTGTATAA 1896 0.4335 MLQPTTGVGMNSAMDDMNLIQQAQRHHLVVREIGEEIDLEIGPGEDDPSFGNATLIGAPLRESSAEDHGESKQMMVVSQLSNDVQDLSQTQQVKRKKKVVKRWREEWADTYKWAYVDVKDGTPRIFCSVCREFGRKHRRNPYGNEGSRNMQMSALEEHNNSLLHKEALRLQSASKDKIMADKPVYVKAGSILEATLKRDPHEVEFIQAVQEVVQALERVIGKNSHYVNIMERLLEPERMIIFRVPWVDDRGETHVNRGFRVQFNQSMGPCRGGIRFHPSVNLSITKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSENEIMRFCQSFMCEMYHYLGPDKDLPSEEMGVGTREMGYLFGQYRRLVGHFQGTFTGPRIFWSGSSLRPEATGYGLVFFAQLMLADMNKELKGLRCIVSGSGKIALHVLEKLIAYGALPISVSDSRGYLVDEDGFDYMKVQFLRDIKAQHRSLRDYSKTYARSKYYDEAKPWVERYDLAFACATQNEIDQADAINLVNSGCRILIEGSNMPCTPDAVLVLRKANVLVAPAMAAGAGGVVAGELELNHECSLMNWSPEDFESKLQEAMKQTYQRAIKAATDFGYQKESPEALVHGAVISAFLTIAQAMTDQGCV 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01388 631 FunFam Glutamate dehydrogenase 388 553 - -
Vifa4g01388 631 SMART ELFV_dehydrog_3 383 629 IPR006096 GO:0006520|GO:0016491
Vifa4g01388 631 PANTHER NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED 142 631 - -
Vifa4g01388 631 FunFam NADP-specific glutamate dehydrogenase 561 631 - -
Vifa4g01388 631 Pfam Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 236 363 IPR006097 GO:0006520|GO:0016491
Vifa4g01388 631 FunFam Glutamate dehydrogenase 234 369 - -
Vifa4g01388 631 Gene3D Glutamate Dehydrogenase, chain A, domain 3 190 233 - -
Vifa4g01388 631 Pfam Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 382 629 IPR006096 GO:0006520|GO:0016491
Vifa4g01388 631 Gene3D - 388 553 - -
Vifa4g01388 631 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 382 629 IPR036291 -
Vifa4g01388 631 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 190 375 IPR046346 -
Vifa4g01388 631 Gene3D Leucine Dehydrogenase, chain A, domain 1 234 369 - -
Vifa4g01388 631 Gene3D Glutamate Dehydrogenase, chain A, domain 3 560 631 - -
Vifa4g01388 631 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 293 307 IPR006095 GO:0006520|GO:0016491
Vifa4g01388 631 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 414 434 IPR006095 GO:0006520|GO:0016491
Vifa4g01388 631 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 372 394 IPR006095 GO:0006520|GO:0016491
Vifa4g01388 631 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 551 562 IPR006095 GO:0006520|GO:0016491
Vifa4g01388 631 FunFam NADP-specific glutamate dehydrogenase 190 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01388 Vifa-Chr4 415863197 415870180 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01388 218 509 EF-hand Containing Proteins AT5G07440 28.767 5.41e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01388 K00262 - gmx:100788009 1140.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01388 4 415863197 415870180 Vifa4g01388 4 415863197 415870180 ECH