Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01360 ATGGCTACTAATGAGACTTCTTGTTCAACTCAACTAATCGATGGAGATGGCATATTCAATGATTCTGGGATTGACAAATTTATGAAGGAGGTGAAGTTGGCGGAATGTGGGCTTTCATATGCTGTAGTTTCTATTATGGGGCCACAGAGTAGTGGCAAGAGCACACTATTGAATAATTTGTTCAACACCAATTTCAGAGAGATGGATGCTTTTAAGGGAAGGTCTCAAACAACCAAAGGAATCTGGATGGCTAGGTGTGCTGGCATAGAGCCTTGTACGCTTGTGATGGATTTGGAGGGTACAGATGGAAGAGAACGCGGAGAGGATGATACTGCATTCGAAAAGCAGAGTGCTCTGTTTGCTCTTGCTGTCTCAGATATAGTGTTAATAAACATGTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCTCTTTTGAAAACTGTCTTTCAGGTTATGATGAGATTGTTTAGTCCGCGCAAAACAACAATGCTGTTTGTCATACGTGATAAAACAAGGACACCGCTTGAAAATTTAGAACCTGTTTTGCGTGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCACAGGCCCACCTAGAAACCCCATTAAGCGAATTTTTCAACGTTGAAGTTGTTGCGCTTTCTAGTTATGAAGAAAAGGAAGAGCTATTTAGGGAGCAGGTTGCCAACTTGAGGCAACGCTTTCATCAGTCTATTGCTCCTGGTGGTCTAGCAGGGGACCGACGTGGAGTAGTTCCTGCTTCTGGATTTTCTTTTAGCGCTCAGCATATATGGAAAGTCATTAAGGAAAACAAAGATCTCGACCTTCCTGCACATAAGGTTATGGTTGCAACTGTACGTTGTGAAGAAATAGCCAATGAGAAATATGCCGCTTTTGTTGCAAATGAGGAATGGTGTCAATTGGAAGAGACTGTACAATCTAATCCTATTCCTGGATTTGGGAAAAAGATCAACTCACTCCTTCATGCTGGTTTGTCAGAGTATGATGCCGAGGCTACTTATTTTGATGAAGGTGTGAGAACTGCAAAACAAAAGCAACTTCAAGATAAATTGTTGCAACTTGTCCAACCAGCATACCAATCTGCACTGGGACATATTAGATCTGGAATTTTGGAAAAATTTAAGGATGCACTCGAAAAGGCTTTGAAAGGAGGGGAAAGGTTTTCTGCAGCTGCTAATAGTTGCGTTGGGTCTTGTGTGGCTCAATTTGATGAAGCATGTGCAGACGTTGTTATTGAAGTAGCAAATTGGGATACATCTAAAGTACGAGAGAAATTGTTGCGTGATATTGATGCACATGTTGCATCTGTGCGTGAGGCTAAGATTTCTGAACTTGTTTCTTCGTATGAGGAAAAACTGAAACTAGCTTTGTCTGGCCCAATTGAAGCCCTTTTGGATGGAGCTAATAGTGATACTTGGCCATCAATAAGGAGCCTTCTTAAGCGTGAGATGGCATCAGCAGTTTTAGGGTTCTCTGCTGCGCTTAATGCATTTGATATGGATGAAGAAACACGACAGAACATGATTTCGAGTTTAGAGGAATTTGCAAGAGGTGTCGTAGAAGGAAAGGCTAAGGAAGAAGCTGGAAGAGTTCTGATTCGTATGAAGGACAGGTTTACAATGTTATTTAGCCATGATTCCGATTCAATGCCTCGTGTTTGGACGGGGAAAGAAGATATTCGAGCTATCACTAAAACTGCTCGCTCTGCTTCTTTGAAGCTACTGTCTGTTATGGCTGCCCTTCGTTTGGATGATGGTGATAAAGATAATATTGAGAAAACATTAGCAGTTACATTGCTGGATTCATCAAGCGGTGCTGTTAGAGATAGGAGTATTACAGCGGCTGATCCGCTAGCTACTAGTAGTTGGGAAAAGATTCCACCAGCTAAGACACTGATTACACCTGTCCAGTGCAAATCTTTGTGGAGGCAGTTCAAGATGGAGACAGAGTACAGTGTTTCGCAAGCCATTTCTGCACAGGAGGCCAACAAGCGCAATAACAACTGGCTACCTCCCCCATGGGCAATACTGGCTTTGGTTATTCTGGGATTCAATGAATTTATGACCCTTTTAAAAAATCCTTTGTATTTGGGTGTCATCTTTGTTGTTTTTCTTCTCGTGAAAGCCTTGTGGGTGCAACTTAACATTGCTGGTGAATTTAGCCATGGAATACTCCCAGGACTCATTTCCTTGTCCACCAAGTTTGTTCCGACTATCATGAACCTTATGAAAAGACTAGCAGAGGAGGGGAGTAACGCCACAACTAACAACAATCCTCAGAGAAACACATCACAAAACAACTCCAATGCTGTTCCTGTTGGCAGCTCTGTTTCATCTAGCTCTTCATCCAACATAACCTCGTTGGATAACAGAAACAAATATACCAGTTCATCATCAAAAGATGAGTAA 2442 0.421 MATNETSCSTQLIDGDGIFNDSGIDKFMKEVKLAECGLSYAVVSIMGPQSSGKSTLLNNLFNTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHLETPLSEFFNVEVVALSSYEEKEELFREQVANLRQRFHQSIAPGGLAGDRRGVVPASGFSFSAQHIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYAAFVANEEWCQLEETVQSNPIPGFGKKINSLLHAGLSEYDAEATYFDEGVRTAKQKQLQDKLLQLVQPAYQSALGHIRSGILEKFKDALEKALKGGERFSAAANSCVGSCVAQFDEACADVVIEVANWDTSKVREKLLRDIDAHVASVREAKISELVSSYEEKLKLALSGPIEALLDGANSDTWPSIRSLLKREMASAVLGFSAALNAFDMDEETRQNMISSLEEFARGVVEGKAKEEAGRVLIRMKDRFTMLFSHDSDSMPRVWTGKEDIRAITKTARSASLKLLSVMAALRLDDGDKDNIEKTLAVTLLDSSSGAVRDRSITAADPLATSSWEKIPPAKTLITPVQCKSLWRQFKMETEYSVSQAISAQEANKRNNNWLPPPWAILALVILGFNEFMTLLKNPLYLGVIFVVFLLVKALWVQLNIAGEFSHGILPGLISLSTKFVPTIMNLMKRLAEEGSNATTNNNPQRNTSQNNSNAVPVGSSVSSSSSSNITSLDNRNKYTSSSSKDE 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01360 813 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Vifa4g01360 813 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Vifa4g01360 813 Coils Coil 218 238 - -
Vifa4g01360 813 Hamap Protein SEY1 [SEY1]. 9 762 IPR008803 -
Vifa4g01360 813 Gene3D - 18 246 IPR027417 -
Vifa4g01360 813 MobiDBLite consensus disorder prediction 761 813 - -
Vifa4g01360 813 Pfam Sey1 three-helix bundle domain 323 760 IPR046758 -
Vifa4g01360 813 CDD GBP 36 239 - -
Vifa4g01360 813 PANTHER PROTEIN SEY1 5 778 IPR008803 -
Vifa4g01360 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 276 IPR027417 -
Vifa4g01360 813 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 18 273 - -
Vifa4g01360 813 MobiDBLite consensus disorder prediction 761 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01360 Vifa-Chr4 406615141 406623192 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01360 K22698 - gmx:100777656 1311.59