Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01311 ATGGCTTCTCATTTACTCAATCACTCCAAAAAGTTAAGAAATGCTTCGAGCTTGTTACACCATGATCGTGCGGTTTTGGTTCGTTGGTTTTGCAGCGACGTTCAACCCTTATCTATCACCAAAAATCGTGATATGTTGAAAACCCGAATACAAGATTATGAGTCTTCAGCGAGAAACCGTGTCTCTGAATCAGCTTCGAACTTTACTAAACCTTCATTTGGTGTACAGAAGAGAAACATGTCCACCATGAAAAGGGGTTACACGAGGTTGAATGGAGAGGTTTTACAAAATTCACAGGTTCTGTCAAGGAGAAGCTACTCATCAGCTGCAGATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAGGGTAACATTGCAAGATGGTTGAAGAAAGAAGGGGATAAAGTGTCTCCTGGTGAAGTGCTCTGTGAAGTTGAAACTGATAAAGCTACTGTTGAAATGGAGTGCATGGAGGATGGTTTTCTGGCCAAAATAGTACGTAAGGAGGGGGAAAAAGAAATTCAAGTTGGCGAGGTAATTGCCATAACTGTTGAAGATGAAGAGGACATTGCAAAGTTTAAAGATTACAAACCTTCAGCATCTGAATCTAGTGACCCACCTGCCAAAGAAACACCTGCCCCACCTCCCCCAAAGAAAGAGGTGGCAGAGGAGCCTGCACGAGAACCTGAGCCAAAGGCTTCCAAGCCTAGTGCACCACCTTCATCTGGAGATCGGATATTTGCTAGTCCCCTTGCTAGAAAGTTGGCTGAAGAGAAAAATGTGACTCTCTCCAGCATTAAAGGAACAGGGCCTGATGGGCTCATTGTCAAGGGTGACATTGACGATTACTTGGCTTCTAGTGGTGTTAAAGAAGTTTCAGCACCCTCAAAGGCCAAGGCTGCAACGGATGTAGCATTGGATTATACCGACATTCCTGTCTCTCAGATAAGAAAGATCACGGCCTCACGTTTGTTGCTATCAAAACAAACTATTCCTCATTACTATCTAACAGTCGATACATGTGTTGACAAACTCATGAGTTTGCGATCCCAACTCAATTCATTGCAGGAAGCCTCTGGCGGTGCCCGCATATCAGTAAATGACCTTGTAATCAAGGCTGCTGCTTTGGCTCTCCGTAAAGTTCCTCAGTGTAACAGTTCATGGACAAATGACTATATTCGCCAGTATCATAACGTGAACATTAATGTTGCCGTGCAGACTGAACACGGACTCTTTGTTCCGGTCGTCAGGGATGCAGACAAGAAAGGCCTCTCTAAAATAGGCGAAGAGGTCAAACAATTGGCTAAAAAAGCTAAAGAAAACAGCTTGAAACCCCAAGATTATGAGGGAGGTACATTCACAGTGTCTAACTTGGGAGGACCATTTGGAGTCAAACAGTTCTGTGCCATTGTCAATCCTCCTCAATCAGGCATTCTTGCAGTTGGATCTGCCGAGAGGAGAGTCGTTCCAGGTTCAGGTGCTGAAGAATTCAAATTTGCATCCTTCATCGCCGTAACCCTCAGCTGTGATCATCGTGTAATAGATGGGGCAATTGGTGCTGAATGGCTAAAAGCATTCAAAGGCTACATTGAGAATCCAGAAACAATGTTGTTGTAA 1638 0.4432 MASHLLNHSKKLRNASSLLHHDRAVLVRWFCSDVQPLSITKNRDMLKTRIQDYESSARNRVSESASNFTKPSFGVQKRNMSTMKRGYTRLNGEVLQNSQVLSRRSYSSAADLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEDGFLAKIVRKEGEKEIQVGEVIAITVEDEEDIAKFKDYKPSASESSDPPAKETPAPPPPKKEVAEEPAREPEPKASKPSAPPSSGDRIFASPLARKLAEEKNVTLSSIKGTGPDGLIVKGDIDDYLASSGVKEVSAPSKAKAATDVALDYTDIPVSQIRKITASRLLLSKQTIPHYYLTVDTCVDKLMSLRSQLNSLQEASGGARISVNDLVIKAAALALRKVPQCNSSWTNDYIRQYHNVNINVAVQTEHGLFVPVVRDADKKGLSKIGEEVKQLAKKAKENSLKPQDYEGGTFTVSNLGGPFGVKQFCAIVNPPQSGILAVGSAERRVVPGSGAEEFKFASFIAVTLSCDHRVIDGAIGAEWLKAFKGYIENPETMLL 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01311 545 SUPERFAMILY Single hybrid motif 114 209 IPR011053 -
Vifa4g01311 545 Gene3D - 110 215 - -
Vifa4g01311 545 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 86 545 IPR045257 GO:0006086|GO:0045254
Vifa4g01311 545 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 314 545 IPR001078 GO:0016746
Vifa4g01311 545 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 140 169 IPR003016 -
Vifa4g01311 545 MobiDBLite consensus disorder prediction 223 238 - -
Vifa4g01311 545 Pfam Biotin-requiring enzyme 117 189 IPR000089 -
Vifa4g01311 545 CDD lipoyl_domain 116 189 - -
Vifa4g01311 545 Gene3D - 248 296 IPR036625 GO:0016746
Vifa4g01311 545 SUPERFAMILY CoA-dependent acyltransferases 314 545 - -
Vifa4g01311 545 NCBIfam pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 117 545 IPR006257 GO:0004742|GO:0006090|GO:0045254
Vifa4g01311 545 Pfam e3 binding domain 253 287 IPR004167 GO:0016746
Vifa4g01311 545 Gene3D - 298 543 IPR023213 -
Vifa4g01311 545 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 254 291 IPR004167 GO:0016746
Vifa4g01311 545 MobiDBLite consensus disorder prediction 203 253 - -
Vifa4g01311 545 MobiDBLite consensus disorder prediction 107 126 - -
Vifa4g01311 545 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 111 215 - -
Vifa4g01311 545 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 247 292 IPR036625 GO:0016746
Vifa4g01311 545 ProSiteProfiles Biotinyl/lipoyl domain profile. 115 191 IPR000089 -
Vifa4g01311 545 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 300 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01311 Vifa-Chr4 390738154 390744304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01311 2 545 Acyl Lipid Metabolism Gene Families AT1G54220 68.132 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01311 K00627 - gmx:100778218 845.114