Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01287 ATGAATTTGCAACAGGTTGGGCAGCCTAAATCTTCTAATGGATATGGTCGTCGGAAATCTGAAAAAGATGGGGCATCCAAATCGGATAATAAGATTCCCCTTGGAAAATCAAATGCTGGCAGATTAGCGAGTACAGGTGCAGTGGCAAGTAGTAAAGGTGGTAGTTATGAGAGTCCTTCACGTGATCGACTGGTATATTTGACAGCATGCCTTATTGGGCAACAGGTGGAAGTCCAGGTGAAAAATGGATCTATATACTCTGGAATATTTCATGCTACAAATACTGAGAAAGATTTTGGAATCATTTTGAAAATGGCTTGCTTGACAAAGGATGGGTCTTCGCAAGGGCAGAGCTCCGGTGCTGAATTTGTCAGCAAAGCTCCTTCAAAAACTTTAATTATACCTGGAAAAGAACTTGTACAAGTTATAGCAAAGGATGTTGCTGTTTCTACAGGGAGAGAGTTACAGCGATGGGTACCTGATGAAGATGTTCCACAATGCCCTGAACTTGACAATATCTTTGACGGCTCTTGGAATAGTTCTAGGGGCTGGGATCAGTTTGAAACAAATAAAATGTTGTTTGGTGTAAAAAGCACATTTGATGAGGAACTCTATACTACAAAGCTTGAAAAAGGGCCTCGGATGAGAGAATTGGAGATGCAAGCACTAAGAATAGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATATTCATCTAGCAGAGGAAAGAGGCCTTTACTCTGATGACTTTGACATTGATGAAGAGACCAGATTCTCTTCCGTGTATAGGGTCATAAAGAGACCAGGAAAGGTAAGTGGTGGGAAGGGCAAAAGTGGAGCTCAAACATGGTCAAATTTCTCCACTATGTCATCTCAGTCAAAGACTGGTGGAGATATCCACTCTGGTTCTTATGATCATGCTAAGCAGTTATCATCTGAACTCTCTGGTCAAAGTTACTCATTTTCAGATTTGGAAAGCAGATTTGTCCTCAAATCTGAGCTTGTGACGCAAACAACTGCTGAAGAACCCAGTCAAACAAATGAACTGTAG 1050 0.4143 MNLQQVGQPKSSNGYGRRKSEKDGASKSDNKIPLGKSNAGRLASTGAVASSKGGSYESPSRDRLVYLTACLIGQQVEVQVKNGSIYSGIFHATNTEKDFGIILKMACLTKDGSSQGQSSGAEFVSKAPSKTLIIPGKELVQVIAKDVAVSTGRELQRWVPDEDVPQCPELDNIFDGSWNSSRGWDQFETNKMLFGVKSTFDEELYTTKLEKGPRMRELEMQALRIAREIEGEETQDIHLAEERGLYSDDFDIDEETRFSSVYRVIKRPGKVSGGKGKSGAQTWSNFSTMSSQSKTGGDIHSGSYDHAKQLSSELSGQSYSFSDLESRFVLKSELVTQTTAEEPSQTNEL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01287 349 MobiDBLite consensus disorder prediction 15 29 - -
Vifa4g01287 349 Pfam Ataxin 2 SM domain 61 145 IPR025852 -
Vifa4g01287 349 MobiDBLite consensus disorder prediction 43 57 - -
Vifa4g01287 349 MobiDBLite consensus disorder prediction 1 59 - -
Vifa4g01287 349 MobiDBLite consensus disorder prediction 277 304 - -
Vifa4g01287 349 SMART LsmAD_2 194 264 IPR009604 -
Vifa4g01287 349 PANTHER ATAXIN 2-RELATED 35 315 IPR045117 GO:0003723
Vifa4g01287 349 Pfam LsmAD domain 194 263 IPR009604 -
Vifa4g01287 349 MobiDBLite consensus disorder prediction 270 304 - -
Vifa4g01287 349 Coils Coil 215 235 - -
Vifa4g01287 349 Gene3D - 68 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01287 Vifa-Chr4 388211437 388215125 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01287 - - lja:Lj3g3v2655630.1 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01287 4 388211437 388215125 Vifa4g01287 4 388211437 388215125 ECH