Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01265 ATGTTGGGAAAGAAACGTAGTAGACAGACCATGTTTCTTAACTTGGAAGATGTCAAGCAAGCAGGTCCCATCAAAACCTCAACCCCTAGAAGACAGACTTTCACATCACCAGTTATAAGTCGTACTGTGAAGGAAGTTCGTACTGTTCCTGCACAAGTTGAACGCGTTGGAATAACTAAGGATCAGAATCAATCTGACTCTTCTTTTGGTGAAGGTGTAAATCAAATTGAAACAAATGAACCTAAATCTGATTGTAACAGTGATAATTCTGGATCATTTGGTAGGCTTAGGAGGATCAACAGTGAGACTGAATCTCCTATGGAGGTCAATTTACCACCCATACCAAGACAGGGATCATGGAAACAACAGACAGAGTTGAGGCAGCAGAAGAATGCATTTGTTTCTAATAGGAAGTTGGGTCTGAGTGGTCAAAGCTCCAATGATGTCAGACCAGTAAACAAGAAACATCACTCTATCAAGAAGCAAACCCCTATGAGTTTCCCGTCCCAGGACTCATCCGTTGAACGCCTCATCCGGGAGTTATCACACTGTGAGAATCATAACACTGGAGAGACATGCAAAGGAGAGACCGATTTGAAGTGTGTTCCTGGGAAGTTTGAATCAGTGGAAGAGTATGTTCGAGTATTTGAGCCTTTGCTTTTTGAGGAATGCCGTGCTCAACTTTACAGTACTTGGGAAGAATCAACAGAAACTGTTTCAAGGGATACTCATATTATGGTGCGAGTAAAGGCAAATGAGTCAAGAGAAAGAGGTTGGTATGATGTGAAAGTACTTCCAGTACACGATTTTAAATGGTCATTTAAGGAGGGTGATGTTGCAATTCTTTCGTCCCCCAGGCCTGGATCAGTCAGACCCAAGCAGAACAATTCATCTTTAGCTCACGATGGTGGGGAATCAGAAATCACTGGACGTGTGGTGGGTACTGTTAGGCGGCACATACCTATTGATACCCGTGATCCTCCTGGTGCAATACTCCATTACTATGTAGGGGATTCTTACGATCCTAGCAGGGCTGATGATGATCATATCGTAAGGAAACTTCAAACCGGAAGCATTTGGTATCTCACAGTGCTTGGTTCTCTCGCTACAACACAGAGGGAATATGTTGCTCTACATGCATTTCGTCGCTTAAATGTGCAGATGCAAACTGCAATTCTAAAGCCTAGTCCTGAACACTTCCCAAAATATGAGCAGCAGACCCCGGCAATGCCTGAATGCTTCACGCCAAACTTTGTTGAGTACCTGCGCAGGACCTTCAATGAACCCCAGTTGGCAGCAATCCAATGGGCAGCCATGCATACAGCCGCCGGTACAAGTAGTGTGGCAACAAAGAGGCAAGATCCTTGGCCTTTTACTCTTGTTCAAGGACCTCCAGGAACAGGAAAAACACATACAGTATGGGGAATGTTGAATGTCATTCACCTTGTGCAGTATCAACACTACTACACCTCATTGCTTAAGCATGTAGCTCCTGAAAGCTACAAACATGCTAATGAGCTCAATTCAGAGAATGCCCCCACAGGATCTATTGATGAAGTTCTTCAAAATATGGATCAAAATCTGTTAAGAACTTTGCCTAAACTAGTCCCAAAGCCTAGAATGTTAGTTTGTGCTCCTTCTAATGCTGCCACTGATGAGCTTCTTTCCCGTGTTCTTGATCGTGGATTTATTGATGGAGAGATGAAAGTATATCGACCTGATGTTGCTCGGGTTGGGGTTGATACTCAGACACGGGCTGCCCAAGCAGTTTCTGTTGAGCGGAGAACTGAACAACTTCTGGTCAAGACTCGAGAAGAAGTTTCTGGATGGATGCAACAGTTAAGAAATCGTGAAGCACAGTATACTCAGCAGTTGCATTGTCTTCATAGAGATCTGAATGCTACTGCTGCTGCTGTACGCTCCCAAGGATCTGTTGGTGTTGACCCTGACCTTCTTATGGCCCGTGATCAGAATCGAGATGTTTTGCTGCAGAACCTGGCATCTGTAGTTGAAGGCAGGGATAAGGTTCTGGTGGAGATGTCTCGCCTTGCTGTTTTGGAAGGTAGGTTTCGACCTGGTAGTGGTTTCAATTTGGAAGAGGCCCGTGCTAGTTTAGAGGCCAGTTTTGCCAATGAGGCTGAAATAGTTTTCACTACAGTATCTAGCAGTGGCCGCAAGTTGTTTTCTCGTCTTTCCCATGGCTTTGATATGGTAGTCATTGATGAGGCAGCCCAAGCCAGTGAGGTGGGAGTTCTTCCTCCTCTTTCTCTTGGGGCAGCACGGTGTGTTCTTGTTGGAGATCCTCAGCAGCTCCCTGCCACAGTTATCAGCAAGGCTGCCGGAACACTGATGTACAGCAGGAGTCTTTTTGAAAGGTTCCAACAAGCAGGATGCCCTACAATGTTGCTGTCTGTGCAATATAGAATGCATCCTCAAATTCGGGATTTCCCTTCTAGATACTTTTATCAGGGGCGCCTTAGTGACAGTGAAAGTGTGATAAAATTGCCTGATGAACCATACTATAAAGACCCTTTACTTAGACCTTATATATTCTATGATGTAAGACAAGGCCGGGAGTCTCACAGAGGTGGATCGGCCTCCTACCTCAACACAGTTGAAGCACAATATTGTCTCCGATTGTACGAACATGTTCAGAAAGCAGTGAAATCTTTGGGTCTGGGAAAGATTTCTGTTGGCATAATTACTCCTTATAAGCTGCAGTTGAAATGCCTCCAACGTGAGTTTGAGGAAGTCTTAAATTCAGAAGAAGGGAAGGATCTATATATCAACACTGTAGATGCTTTCCAAGGTCAAGAGCGTGACGTGATTATAATGTCTTGTGTGCGTGCTGGTCATGGGGTTGGTTTCGTTGCTGATATACGTCGGATGAATGTTGCCCTTACGCGTGCAAGAAGGGCTCTTTGGGTGATGGGAAATGCAAATGCACTGACACATTCTGAGGATTGGAAAGCATTGATTGCTGATGCAAAAAACCGAAATTGCTACATGGACACAGAATCTCTTCCCAAGGACTTTTTGGTACCCAAGGGAGCTGTTTACACACCATTGCCTGGTAAGGCACCCTTGAATATGAGGGGTATGAGATCAGGTGGGCCAAGATATAATAGATCAATGGAGATGCATATGGAATCCAGAGTTGGAGCACCATCTGAAGATGACGAGAGGATGAATGGTGCTTCAGTAAGCTCCAGAAATGGGAACCATCGTCCACCACGTTATATAACAGATAACTCGTTAGATGATTTGGGTGATAAATCCAGAGATGCCTGGCAGCATGGCATACAGAAGAGGCAGGGTTCAACTGGAACCATGGCAAAGAGAGATGTATAG 3351 0.4476 MLGKKRSRQTMFLNLEDVKQAGPIKTSTPRRQTFTSPVISRTVKEVRTVPAQVERVGITKDQNQSDSSFGEGVNQIETNEPKSDCNSDNSGSFGRLRRINSETESPMEVNLPPIPRQGSWKQQTELRQQKNAFVSNRKLGLSGQSSNDVRPVNKKHHSIKKQTPMSFPSQDSSVERLIRELSHCENHNTGETCKGETDLKCVPGKFESVEEYVRVFEPLLFEECRAQLYSTWEESTETVSRDTHIMVRVKANESRERGWYDVKVLPVHDFKWSFKEGDVAILSSPRPGSVRPKQNNSSLAHDGGESEITGRVVGTVRRHIPIDTRDPPGAILHYYVGDSYDPSRADDDHIVRKLQTGSIWYLTVLGSLATTQREYVALHAFRRLNVQMQTAILKPSPEHFPKYEQQTPAMPECFTPNFVEYLRRTFNEPQLAAIQWAAMHTAAGTSSVATKRQDPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKHVAPESYKHANELNSENAPTGSIDEVLQNMDQNLLRTLPKLVPKPRMLVCAPSNAATDELLSRVLDRGFIDGEMKVYRPDVARVGVDTQTRAAQAVSVERRTEQLLVKTREEVSGWMQQLRNREAQYTQQLHCLHRDLNATAAAVRSQGSVGVDPDLLMARDQNRDVLLQNLASVVEGRDKVLVEMSRLAVLEGRFRPGSGFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLSHGFDMVVIDEAAQASEVGVLPPLSLGAARCVLVGDPQQLPATVISKAAGTLMYSRSLFERFQQAGCPTMLLSVQYRMHPQIRDFPSRYFYQGRLSDSESVIKLPDEPYYKDPLLRPYIFYDVRQGRESHRGGSASYLNTVEAQYCLRLYEHVQKAVKSLGLGKISVGIITPYKLQLKCLQREFEEVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRAGHGVGFVADIRRMNVALTRARRALWVMGNANALTHSEDWKALIADAKNRNCYMDTESLPKDFLVPKGAVYTPLPGKAPLNMRGMRSGGPRYNRSMEMHMESRVGAPSEDDERMNGASVSSRNGNHRPPRYITDNSLDDLGDKSRDAWQHGIQKRQGSTGTMAKRDV 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01265 1116 MobiDBLite consensus disorder prediction 1049 1116 - -
Vifa4g01265 1116 Gene3D - 357 806 IPR027417 -
Vifa4g01265 1116 MobiDBLite consensus disorder prediction 288 303 - -
Vifa4g01265 1116 CDD DEXXQc_SETX 426 808 - -
Vifa4g01265 1116 MobiDBLite consensus disorder prediction 57 107 - -
Vifa4g01265 1116 MobiDBLite consensus disorder prediction 285 306 - -
Vifa4g01265 1116 MobiDBLite consensus disorder prediction 116 149 - -
Vifa4g01265 1116 Gene3D - 807 1011 IPR027417 -
Vifa4g01265 1116 FunFam P-loop containing nucleoside triphosphate hydrolase 807 1012 - -
Vifa4g01265 1116 Pfam AAA domain 432 778 IPR041677 GO:0004386
Vifa4g01265 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 1007 IPR027417 -
Vifa4g01265 1116 Pfam AAA domain 785 980 IPR041679 -
Vifa4g01265 1116 CDD SF1_C_Upf1 809 997 IPR047187 -
Vifa4g01265 1116 PANTHER DNA2/NAM7 HELICASE FAMILY 160 1051 IPR045055 -
Vifa4g01265 1116 Coils Coil 611 631 - -
Vifa4g01265 1116 MobiDBLite consensus disorder prediction 57 170 - -
Vifa4g01265 1116 MobiDBLite consensus disorder prediction 1081 1099 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01265 Vifa-Chr4 382365948 382370992 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01265 - K10706 gmx:100794516 1933.3