Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01258 ATGGCTGCTGAATCTCCCACTTCTGTTCGTAAAGTGGTTGTTCATCTCAGAGCCACCGGTGATGCTCCTATTCTCAAACAATCCAAATTCAAGATAGCTGGAACTGATAAATTTGCCAAAGTGATAGAGTTTCTTCGCAGACAGCTCCATAGGGAGACATTGTTTGTATATGTCAACAGTGCTTTTTCACCAAACCCTGATGAACTGGTCGTAGATTTGTATAATATAACAGGCATTTTTAGCTCTCATAAGATAGTTTCAAGTTTCAACATCGAAAAACAAATAAACACATGCTCTTATGCTATTTCTTTTCTCTTATGTTCCACCCCGATTTTTCAGAATTTTGGTTTTGATGGAAAACTGGTTGTCAACTACGCATGTTCTATGGCATGGGGCTAA 399 0.386 MAAESPTSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIEFLRRQLHRETLFVYVNSAFSPNPDELVVDLYNITGIFSSHKIVSSFNIEKQINTCSYAISFLLCSTPIFQNFGFDGKLVVNYACSMAWG 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01258 132 Gene3D - 5 132 - -
Vifa4g01258 132 SUPERFAMILY Ubiquitin-like 10 82 IPR029071 -
Vifa4g01258 132 Pfam Ubiquitin-like autophagy protein Apg12 11 86 IPR007242 GO:0000045|GO:0005737
Vifa4g01258 132 CDD Ubl_ATG12 11 131 - -
Vifa4g01258 132 FunFam Ubiquitin-like protein ATG12 5 95 - -
Vifa4g01258 132 PANTHER AUTOPHAGY PROTEIN 12 3 87 IPR007242 GO:0000045|GO:0005737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01258 K08336 - tcc:18596213 166.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01258 4 379918107 379921053 Vifa4g01258 4 379918107 379921053 ECH