Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01251 ATGAAGATTATTCACACTCTTCTCCTTTTCACTTTTCTCTCATTCACCACTTCTTATGCCTCTGTCAATGATTTCTGTGTAGCAAATCTTATGGCTCCAGATACCCCTTCAGGCTATCACTGCAAACCCCTTGCAAACATAACATCAGACGATTTCGTCTTCCACGGCTTCGTAGCCGGAAACACCAAAAACTCCTTCAATGCTGCACTTTCCTCGGCTTTTGTCACCGATTTTCCCGCTCTTAACGGACTTGGAATCTCCGCAGCACGATTAGACATAGCCGAAGGTGGATCAATTCCAGCACATACTCATCCCGGTGCTACTGAATTATTGATAATGGTTCAAGGTGAAATAACTGCTGGATTTTTTACAACAAGCGCTGTTTATTCAAAAGCATTGAAACCAGGTGATCTTATGGTTTTTCCGCAAGGGATGTTGCATTTTCAAGTCAATTCCGGTAAAGGACAGGCTACTGCTTTTCTTACCTTTAGTAGTGCAAACCCTGGTGCTCAATTACTTGATCTTCTATTGTTTTCGAATAATTTGTCTTCTGAAATAGTGGCACAAACTACTTTCCTTGATCTTGCACAAGTTAAGAAGCTAAAGGCTCGTTTTGGAGGAAGAGGGTAG 630 0.419 MKIIHTLLLFTFLSFTTSYASVNDFCVANLMAPDTPSGYHCKPLANITSDDFVFHGFVAGNTKNSFNAALSSAFVTDFPALNGLGISAARLDIAEGGSIPAHTHPGATELLIMVQGEITAGFFTTSAVYSKALKPGDLMVFPQGMLHFQVNSGKGQATAFLTFSSANPGAQLLDLLLFSNNLSSEIVAQTTFLDLAQVKKLKARFGGRG 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01251 209 Gene3D Jelly Rolls 19 208 IPR014710 -
Vifa4g01251 209 Pfam Cupin 59 198 IPR006045 -
Vifa4g01251 209 CDD cupin_OxOx 20 205 IPR001929 GO:0030145
Vifa4g01251 209 FunFam Auxin-binding protein ABP19a 19 208 - -
Vifa4g01251 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 18 203 - -
Vifa4g01251 209 SUPERFAMILY RmlC-like cupins 24 206 IPR011051 -
Vifa4g01251 209 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Vifa4g01251 209 PRINTS Germin signature 131 151 IPR001929 GO:0030145
Vifa4g01251 209 PRINTS Germin signature 164 179 IPR001929 GO:0030145
Vifa4g01251 209 SMART Cupin_1_3 55 199 IPR006045 -
Vifa4g01251 209 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01251 Vifa-Chr4 376363962 376364591 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01251 20 209 Miscellaneous Gene Families AT1G72610 57.292 6.90e-74 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01251 - - gmx:100527498 316.62