Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01249 ATGAAGATTATCCACAATATTATATTCTTTTTGGCTCTTGCCTCATTTTATATTCCCTATGCTACTTCTAGCAATGATTTTTGTGTAGCAAACCTATTACTCCCAACCACCCCTTCAGGGTATCAATGCAAATCCGAAGATAATGTCACAGTGAATGATTTTGTATTCTCTGGCTTTGTAGCTCCAAAAACAGAAGATCCTTTTAAGGTTGGATTTACTTCTGCATTTGTCACTGAATTACCAGCCCTTAATGGACTTGGTGTTTCTGCGGTAAAAGCAGCCATGGATATAAATGGAACTGTACCAATTCACTCTCATCCTGATGCAACTGAATTAATTATCAATTATGAAGGCGAAGTCACGGCTGGATTTATTACACCAAACAAAGTTTATATAAAGGTTCTTAAACCTGGTGATGTTATGGTTATTCCAAAAGGACTATTGCATTTTCTAGTTAACACTAGTGGTAAAAAAGGCACTGGTTTTGCAGTTTTTAGTAGCTCAAATCCTAGTGTGCAATTGTTTGATAATCTATTATTTGGCAATGATTTATCAAGTTCCATAATTGCACAAACTACTCTACTTGATGTCTCACAGATTAAGAAGCTTAAGGCTGTGTTTGGCGGTAGTGGTTAG 636 0.3616 MKIIHNIIFFLALASFYIPYATSSNDFCVANLLLPTTPSGYQCKSEDNVTVNDFVFSGFVAPKTEDPFKVGFTSAFVTELPALNGLGVSAVKAAMDINGTVPIHSHPDATELIINYEGEVTAGFITPNKVYIKVLKPGDVMVIPKGLLHFLVNTSGKKGTGFAVFSSSNPSVQLFDNLLFGNDLSSSIIAQTTLLDVSQIKKLKAVFGGSG 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01249 211 SMART Cupin_1_3 57 201 IPR006045 -
Vifa4g01249 211 CDD cupin_OxOx 26 207 IPR001929 GO:0030145
Vifa4g01249 211 ProSitePatterns Germin family signature. 99 112 IPR019780 GO:0030145
Vifa4g01249 211 Gene3D Jelly Rolls 22 211 IPR014710 -
Vifa4g01249 211 FunFam Auxin-binding protein ABP19a 21 210 - -
Vifa4g01249 211 PRINTS Germin signature 166 181 IPR001929 GO:0030145
Vifa4g01249 211 PRINTS Germin signature 104 124 IPR001929 GO:0030145
Vifa4g01249 211 PRINTS Germin signature 133 153 IPR001929 GO:0030145
Vifa4g01249 211 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 23 204 - -
Vifa4g01249 211 Pfam Cupin 72 200 IPR006045 -
Vifa4g01249 211 SUPERFAMILY RmlC-like cupins 26 207 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01249 Vifa-Chr4 375877229 375877864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01249 1 210 Miscellaneous Gene Families AT5G20630 43.868 1.20e-53 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01249 - - mtr:25500551 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01249 4 375877229 375877864 Vifa4g01249 4 375877229 375877864 ECH