Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01248 ATGTCCACCTTGGAGATGATTCACATTACTCTTTTCTTTTTTTATCTTCTCTCATATACCTCCCATGCTACATCTACCAATGATTTCTGTGTAGCCAACTTCATGTTTCCAAAAACCCCTTCAGGCTATCCATGCAAGTCAGAAACAAATGTAACATCGGATGATTTTGCATCCTCTAGTCTTAATGTACTCAACACTGCATTTCTCAAGGATATACCCGGCCTCAACGGACTCGGTATCTCTGCAGCAAAAATAGATATTGATATAAATGGAACGGTTCCAATGCATATTCATCCCGATGCATCTGAATTAATAATAGTTTCTCAAGGTCAAATTACTGCTGGATTTATAACACCTACAAACCTTTATGAGAAAAATCTAAAAGCTGATGATGTTTTCGTTTTTCCAACAGGACTATTGCATTTTATAGTTAATACTGGTTCGAGAAATGCTATAGTTTATGCTGTTTATGGTAGCGAAAACCCTAGCATTCAATTACTTTTTGATTTATTATTTAAAAATAACTTACCAACTCCAATAATTGAAAAGACTACTCTCCTTGATGCTTCACAAATTAAGAAGCTTAAGGCTCAGCTTGGTGGCAGTGGCTAG 612 0.3595 MSTLEMIHITLFFFYLLSYTSHATSTNDFCVANFMFPKTPSGYPCKSETNVTSDDFASSSLNVLNTAFLKDIPGLNGLGISAAKIDIDINGTVPMHIHPDASELIIVSQGQITAGFITPTNLYEKNLKADDVFVFPTGLLHFIVNTGSRNAIVYAVYGSENPSIQLLFDLLFKNNLPTPIIEKTTLLDASQIKKLKAQLGGSG 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01248 203 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 16 197 - -
Vifa4g01248 203 PRINTS Germin signature 125 145 IPR001929 GO:0030145
Vifa4g01248 203 PRINTS Germin signature 158 173 IPR001929 GO:0030145
Vifa4g01248 203 PRINTS Germin signature 96 116 IPR001929 GO:0030145
Vifa4g01248 203 SMART Cupin_1_3 49 193 IPR006045 -
Vifa4g01248 203 Gene3D Jelly Rolls 22 203 IPR014710 -
Vifa4g01248 203 Pfam Cupin 61 192 IPR006045 -
Vifa4g01248 203 SUPERFAMILY RmlC-like cupins 55 200 IPR011051 -
Vifa4g01248 203 CDD cupin_OxOx 22 199 IPR001929 GO:0030145
Vifa4g01248 203 ProSitePatterns Germin family signature. 91 104 IPR019780 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01248 Vifa-Chr4 375801768 375802379 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01248 25 203 Miscellaneous Gene Families AT1G72610 46.073 1.74e-53 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01248 - - mtr:25500551 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01248 4 375801768 375802379 Vifa4g01248 4 375801768 375802379 ECH