Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01241 ATGTCCTCTCAAGACCAAGTACTAGTCTCCTTTCTCTCCCACCTAGCCCTATCCCTCGACGGTGCCGTTTTAGGTCTATCCCTAGCCTACGTCACCGTCCGCACCATCAAAAAATTCACCTTCACCTCCGCCGCTCTCCGTAAGATCACCCACGCTCCTTCCGTCTCCGTCTCCGACCTTCGCTCGCTCCTCGACGACACCGCCTCGGAGGATAACGGAAACAACTCCGGCGATGATAGAATCGTAATTGTCCGCGGTACTGTTGATGCCAAATCCGCTGTTGATGGGAGTTGGAAAGCCTTCTGGCCTGGTGTCTTGATTTCTCGTGAGTCTGGTGATAAAGGCGTTGTTCTTCAAAGAACTCAAACGTGTATATACAGTGAATTGAAAGGCTTATTTGGATGGACTTCTGATCTCCGAGCCGTGTTTATGAAATCTCGGAGACAACGAGAATCCACATCCTTAAGAAAGGTCCCTTTTGTTCTCATTGATGTTGGACGACAGTCAAATACCGAGTATGTTGTTGTCAACATGGATGGATCGACACATCCTTTACCTCTTACAACAGTTTATCACAAATTGCAACCCATAAATCCTCCTTATACTCTCTTGCAAGCGTTTTTTGGGGGTCAATATCCGGTTGGACTGCTCGATGAAGAGAAAATTCTTCCCTTGGGGAAGGATATCAGTGCTGTAGGCCTTTGTAGTTTAAGAAATGGAATTGCTGAAATCAAGTCTTGTGAAGATCTTCCATATTTTCTGTCTGACTTGAGTAAAAATCAGATGGTTGTAGATCTTTCCTTCAAAACAAGAGTACTGTTTTGGAGTGGCATTGTTCTTGGTTCAATGTCAGTTGGGATCATTGGCTATGCAGTTGTGAGGAACTGGAATAGATGGAAACAATGGAAGCAAAGAAGGCAGCTCCAACAACAAAGGCAAACAGTCATTGAAGTTGATTCTCAGATAGATGACGGCGATATTGAAAATGTTCCAGATGGACAATTATGCGTTATATGTCTGATGAGGAGAAGGCGTTCTGTTTTTATTCCATGTGGGCATCTTGTATGTTGCCAAGGGTGTACTATATCAGTTGAAAGTGAAGTGGCACCCAAGTGTCCAGTTTGTCGTCAGGAGGTTCGGGATTCAGTGCGAATCTTCGAATCTTGA 1167 0.449 MSSQDQVLVSFLSHLALSLDGAVLGLSLAYVTVRTIKKFTFTSAALRKITHAPSVSVSDLRSLLDDTASEDNGNNSGDDRIVIVRGTVDAKSAVDGSWKAFWPGVLISRESGDKGVVLQRTQTCIYSELKGLFGWTSDLRAVFMKSRRQRESTSLRKVPFVLIDVGRQSNTEYVVVNMDGSTHPLPLTTVYHKLQPINPPYTLLQAFFGGQYPVGLLDEEKILPLGKDISAVGLCSLRNGIAEIKSCEDLPYFLSDLSKNQMVVDLSFKTRVLFWSGIVLGSMSVGIIGYAVVRNWNRWKQWKQRRQLQQQRQTVIEVDSQIDDGDIENVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCTISVESEVAPKCPVCRQEVRDSVRIFES 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01241 388 ProSiteProfiles Zinc finger RING-type profile. 336 376 IPR001841 -
Vifa4g01241 388 Pfam Zinc finger, C3HC4 type (RING finger) 334 381 - -
Vifa4g01241 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 388 IPR013083 -
Vifa4g01241 388 SMART ring_2 336 375 IPR001841 -
Vifa4g01241 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 388 IPR044247 GO:0004842
Vifa4g01241 388 Pfam E3 Ubiquitin ligase 144 286 IPR022170 GO:0004842|GO:0006996|GO:0016567
Vifa4g01241 388 CDD RING-HC_SPL2-like 331 377 - -
Vifa4g01241 388 SUPERFAMILY RING/U-box 331 381 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01241 K15688 - gmx:100811939 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01241 4 374087821 374092154 Vifa4g01241 4 374087821 374092154 ECH