Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01237 ATGGCGGTTTCAACTATATCTCTTTACGCGAGTCCACCGAGTAGTGTATGTTCCGCGCCGCATCAGATTAGTCCTCACGCTTCCTATGATTTCGATTTTGGATCTAGATCTTCGTCTCCGGCATCGACGGCGACGGCGTCGGCTTCGACGTCGGCGAGGCCCGTGATGGGTGGTTTATCGTGTTTGTTTTCGTCTTCGGTGGCGGTGAAGCATGTTCCGCTGGCTTCGAGTTTTTCAGATGAGGATGAATTGAAGGAACTTGGTGGTTCGTTTTCGTATTCGCCGACTAAGTTTGGTGGATCGTGGAAGAGGGATAGGGATCATCAGATTCAGAGTCCGGTTTCGGTTTTTCAGTGTCCGGTTTCGTGTAGTGGTAGCAGCTTGGGGACGGTTCGTTCGGCGAGGAGTAGTAGTGCTGGTGGGTTCTTTGAAGGGTTTGTGAGGAGTGCTTTGGGTTCTTCTTGTTTGGATTATGATTCTACTGGTGTTAGGCTTCGCGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGAAATTGGTGGTGAGTTTGATGGTGCTGATTCTTCTGGAGTTGTTGATGAGTTGACTTTCAATTTGGAGGATACTTTTGTGGAAGGTTGCCTTGGGTTTGAGTTTGAGCCTTATGCTAAGAAGTTGTTGATGAGTGCTCAGATGAGACATAAGATCTTTTGTGAAGAGTTTGTTATTAAGGCGTTTTGTGAAGCTGAGAAAGCACATAGAGGACAGATGCGAGCGAGTGGTGATCCGTATTTGCTGCATTGTTTGGAAACTGCTGTGTTGCTGGCTTTGATCGGTGCAAATTCGACTGTAGTTGCCGCGGGGCTTTTGCATGATACACTTGATGATGCTTTTCTTACTTATGATTATATATTTGGGATGTTTGGAGCTGGAGTTGCTGATTTAGTTGAAGGGGTTTCTAAACTGAGTCACTTAAGCAAGCTTGCTCGAGACAACAACACAGCTAGCAAGTCTGTTGAAGCAGACCGCCTGCATACAATGTTCCTTGCCATGGCAGATGCAAGGGCTGTCCTCATTAAATTGGCAGATCGATTACATAATATGATGACACTAGATGCATTACCGGTTGCCAAGCAGCAGAGGTTTGCAAAGGAGACTTTGGAGATTTTTGCACCTTTGGCCAATCGCTTAGGAATAGCTAATTGGAAGGAACAGTTGGAAAATTTATCTTTTAAGCATCTCAACCCGGTGCAGCACATGGAACTTTCGTCAAAACTTGTGGAATCGTATGATGATGCAATGATTGCTTCTGCAATAGAGAGATTAGAGCAAGCACTCAAAGATGAAGGCATTTCTTTTCATGTCATCTCTGGGCGGCACAAAAGCTTGTATAGCATTTATTGCAAAATGTTGAAGAAGAAACTAACCATAGATGATATCCATGACATTTATGGGCTGCGCTTGATTGTTGAAAAGGAGGAAGACTGTTACAAAGCCTTAAAAGTTGTTCACCAGTTATGGGCGGAGGTACCTGGAAAACTGAAAGATTACATACGTGGCCCCAAGTTCAATGGGTATCAATCTCTGCACACTGTGGTGATGGGTGAAGGTAAGGTTCCCCTCGAAGTACAAGTTCGAACGAAAGATATGCATTCACAAGCAGAATTTGGATTTGCCGCTCATTGGAGGTACAAGGAAGATCACTGTCAGCTTTCTTCCTATGTGCTTCAGATGGTTGAGTGGGCTCGTTGGGTTGTCACCTGGCAGTGCGAAGCAATGAGTAAAAATTCTACATCTGTTGGATGTGTCGATTCAATCAAGCCACCTTGCAAGTTCCCTTCTCATGTTGAGAATTGTCCATATTCTTACAAGCCTGATTGTGCGCAGGATGGGCCTGTGTTCGTTATCATGATTGAGAATGATAAGATGTCTGTTCAAGAATTTTGTGCAAACTCAACAGTACTGGATTTGTTGGAGAGAGCGGGGCGAGCAAGCTGTAGGTTGACAACATATAGGTTTCCTCTGAAGGAAGAATTGAGGCCAAGGCTGAATCACAAGCCTGTAAGTGATCCAAATTGCAAGTTGAAGATGGGAGATGTGGTGGAGCTTACACCGGCCATACCTGACAGGTATCTGACAGAATATAGGGAAGAAATCCAGCGAATGTATGATCGCGGGCTAACTGTATCAAAAATGGGAACTACTCCTGCAAGCAGCATGGTTGGCACCAGTTGA 2214 0.4539 MAVSTISLYASPPSSVCSAPHQISPHASYDFDFGSRSSSPASTATASASTSARPVMGGLSCLFSSSVAVKHVPLASSFSDEDELKELGGSFSYSPTKFGGSWKRDRDHQIQSPVSVFQCPVSCSGSSLGTVRSARSSSAGGFFEGFVRSALGSSCLDYDSTGVRLRGGGGGGGGGGGEIGGEFDGADSSGVVDELTFNLEDTFVEGCLGFEFEPYAKKLLMSAQMRHKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLLHCLETAVLLALIGANSTVVAAGLLHDTLDDAFLTYDYIFGMFGAGVADLVEGVSKLSHLSKLARDNNTASKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPVAKQQRFAKETLEIFAPLANRLGIANWKEQLENLSFKHLNPVQHMELSSKLVESYDDAMIASAIERLEQALKDEGISFHVISGRHKSLYSIYCKMLKKKLTIDDIHDIYGLRLIVEKEEDCYKALKVVHQLWAEVPGKLKDYIRGPKFNGYQSLHTVVMGEGKVPLEVQVRTKDMHSQAEFGFAAHWRYKEDHCQLSSYVLQMVEWARWVVTWQCEAMSKNSTSVGCVDSIKPPCKFPSHVENCPYSYKPDCAQDGPVFVIMIENDKMSVQEFCANSTVLDLLERAGRASCRLTTYRFPLKEELRPRLNHKPVSDPNCKLKMGDVVELTPAIPDRYLTEYREEIQRMYDRGLTVSKMGTTPASSMVGTS 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01237 737 SUPERFAMILY HD-domain/PDEase-like 217 408 - -
Vifa4g01237 737 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 111 703 - -
Vifa4g01237 737 Pfam Region found in RelA / SpoT proteins 451 560 IPR007685 GO:0015969
Vifa4g01237 737 SMART RelA_SpoT_2 451 561 IPR007685 GO:0015969
Vifa4g01237 737 SUPERFAMILY Nucleotidyltransferase 398 587 IPR043519 -
Vifa4g01237 737 SMART hd_13 253 370 IPR003607 -
Vifa4g01237 737 Gene3D Hypothetical protein af1432 215 408 - -
Vifa4g01237 737 FunFam GTP pyrophosphokinase RelA 217 408 - -
Vifa4g01237 737 ProSiteProfiles S4 RNA-binding domain profile. 675 712 - -
Vifa4g01237 737 Gene3D Beta Polymerase, domain 2 412 541 IPR043519 -
Vifa4g01237 737 FunFam GTP pyrophosphokinase RelA 409 541 - -
Vifa4g01237 737 CDD NT_Rel-Spo_like 431 549 IPR007685 GO:0015969
Vifa4g01237 737 Pfam HD domain 242 392 - -
Vifa4g01237 737 CDD HDc 255 383 IPR003607 -
Vifa4g01237 737 ProSiteProfiles HD domain profile. 257 361 IPR006674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01237 Vifa-Chr4 373248900 373252245 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01237 261 558 EF-hand Containing Proteins AT3G17470 31.153 1.46e-39 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01237 K00951 - gmx:100787301 1150.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01237 4 373248900 373252245 Vifa4g01237 4 373248900 373252245 ECH