Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01214 ATGTCTTGGGCGGGTCCTGAGGATATCTACCTTTCTACTTCACTTGCTAGTTATCTTGACAAGAAACTTCTTATATTGCTAAGAGATGGTAGAAAACTCATGGGGACACTTCGCTCTTTTGATCAATTTGCTAATGCTGTTCTTGAGGGTGCCTGTGAGAGGGTTATTGTTGGTGATTTGTATTGCGATATCCCTCTGGGTCTTTATGTAATTCGTGGAGAGAATGTTGTTCTAATTGGTGAAATGGACTTGGAGAGGGAGGAACTTCCCCCACATATGACGCGTGTTCCAACAGAAGAAATTAGGAGGGCCCAGAAAGTAGAAAGGGATGCTTCAGATCTGAAAGGAACTATGAGAAAAAGAATGGAGTTCCTTGACTTGGACTAG 387 0.4264 MSWAGPEDIYLSTSLASYLDKKLLILLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGEMDLEREELPPHMTRVPTEEIRRAQKVERDASDLKGTMRKRMEFLDLD 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01214 128 SMART Sm3 13 81 IPR001163 -
Vifa4g01214 128 ProSiteProfiles Sm domain profile. 10 85 IPR047575 GO:0003723
Vifa4g01214 128 Gene3D - 12 125 - -
Vifa4g01214 128 FunFam U6 snRNA-associated Sm-like protein LSm1 12 125 - -
Vifa4g01214 128 PANTHER LSM1 8 122 IPR044642 -
Vifa4g01214 128 Pfam LSM domain 14 80 IPR001163 -
Vifa4g01214 128 SUPERFAMILY Sm-like ribonucleoproteins 13 83 IPR010920 -
Vifa4g01214 128 CDD LSm1 12 82 IPR034104 GO:0000956
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01214 Vifa-Chr4 366876405 366878483 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01214 K12620 - rcu:8279030 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01214 4 366876405 366878483 Vifa4g01214 4 366876405 366878483 ECH