Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01170 ATGGATGCAATAGACAAGGCATTTTCTGAGCTTGTCAGTATCATTAAATCATGGATACCCTGGCAATCTGAGCCAGCGAACGTGTCGCGTGATTTTTGGATGCCGGATCATAGTTGTAGAGTATGCTACGAGTGTGATGCACAATTCTCTTTATTTAATCGCAGACACCATTGTCGTCTGTGTGGGCGGATTTTTTGTTCCAAGTGTACTACGAATTCGGTTCCTGCACCGTTTAGCGGAAGCCAGAGGAATTCTTGGGATGAGTGGGAGAAGATTCGGGTGTGTAATTATTGTTACAAGCAATGGGAGCAGGGTATAGTTTCTTTTGAGAAAAGTGGTCAGGCTTCTAATCTTGAACGGACAATGTCTGCTACAAGTGTAGCTAGTAGTAAAACCAGTGCCACTGGTAATAGTAGTAATATTACTATTTGCTCCATGCCTTATTCAGTTGGTTCTTATAAACAAAAACAACAGAGTTCATGTGTGAACAACATGCATCAATCACCTAAGAGGGGAAAAGAAACTGATAGGGAAGGTTTATCATCCATAGGAGGGAGGAATATTGATCTTGTAGAAGACCTAGGGGACCCATTAACGAAGCAATACGGGTTTTCAATGAGCAGGAGTGACGATGATGAGGATGAGTATGATGTATATCGGTCGGATTCTGATATAAGGCAATATCCTCAAGTGAATAGCTACTATGGACAAGCCGTGCTTGATGGAATAAACAACATTGATGGTTCACAGAATGTGCCCAATGGAGAAAACATTGATGCAAAACTCTCTTCAAACTACAACTTTGATGATAGTGGTTTGGAAGGACCGCCAGTTATTGCAAAAAATGGAGATGAACCTGATATCTGTGATGAAAATGATGCACCTTCCTCGTTATATGTTTCAGAGGATGTTGATGCTGAACCTGTCGATTTCGAAAATAATGGACTTTTGTGGCTCCCCCCTGAACCCGAAGATGAAGAAGATGACCGGGAAGCTATTATGTATGATGACGACGATGATAATGATGGGAATGGCACTGGAGAGTGGGGCTATCTTCGCAGTTCAAGCAGTTTTGGAAGTGGGGAGTATCGACAGAGAGATAGGTCAAATGAGGAACACAAGAAGGTAATGAAGAATGTAGTTGATGGACACTTTAGGGCTTTGGTATCACAGCTCTTACAGGTTGAGAACCTACCAGTTGAAGACAATAACAAAAATAGTTGGTTGGAAATAATCATATCTCTGTCATGGGAAGCTGCTAATTTACTGAAACCAGATATGAGCAAAGGTGGAGGGATGGACCCGGCTGGTTATTCGAAAGTCAAATGCATAGCGCGTGGGAGCCGCATTGAAAGTGTGGTGGTTAAAGGAGTTGTTTGTAAGAAAAATGTGGCTCATCGACGAATGACGTCAAAAGTGGATAAACCTCGCTTGTTGATCCTTGGAGGGGCTCTTGAATATCAGCGTGTTACCAATCTCTTGTCTAGTGTTGATACCCTATTGCAGCAGGAAACGGACCATCTTAAGATGGCAGTGGCAAAGATAGCTTCACACCAGCCAAGTATCCTTCTGGTAGAGAAATCAGTTTCTCGATATGCACAAGAATATCTTCTTGCAAAAGACATAACACTAGTTCTCAATGTGAAGAGACCGCTTTTAGAGCGCTTAGCACGTTGTACTGGCACTCAAATAGTGCCTTCAATAGATCATCTTTCATCACAAAAGTTGGGTTACTGTGAAACGTTTCATGTTGAAAAATTTCTCGAAGACCTAATTGTTGCTGTTCCGGGTGCAAAAAAACCAATGAAAACATTGATGTTTTTTGAAGGTTGCCCAAAACCATTAGGTTGCACAATTTTACTTAGAGGAGCTGACATGGATGAACTGAAAAAGGTAAAGCATGTGGTTCAGTATGCAGTTTTTGCAGCCTACCATTTGGCTATGGAGACATCTTTTCTTGCTGATGAAGGAGTCTCTCTGCCAGAACTTCCATTAAACAGTCTCGCCCTTCCAAATAAGTCGTCATCCATTCAAAGGTCAATCTCAACGGTTCCTGGTTTTAGTGTTCCGGGCAATGAGAAGTCTCAGATTCATGATCCCAACAATGGACCACGGAGGACCAAAAGTGTCACAGTTACTGAACTAGTCTCCCCAGTTTGCAATACTGGATCCTTATCTAATGGTTATTCTCAATCTTTGCCATCTGGATCAAATCTTAACCATTCAGCTGCCTTGTACTCCTCCATTGTTGTTTCTGGAGATGATATTCCTGAATTGCACCCTAAGAAGCTTCTTTCCAAACAACCTCTGGTAAAAGAAACTTCTGTGGTGGACAACACTCTGGTAGTCATGGATGATACCTTTGTAAATGGTACAGAAACTTCAGAGCAAATATATCAAGGCATTTTAGCTGAAAATTCTCGAAATGGTTATAACCAAATCTATGCAAATAAATTAAGCGCTTTGGGGTCGTCGTTATCTCCAAATTATGCTCAAAACCATACTGAGAAGAAGCTTGTAACTACAAATGAAGAACCAGTTCCTCAAAAAGAAGAGTTTCCTCCATCACCCTCTGACCATCAAAGCATTTTGGTGTCTTTGTCGTCTCGGTGTGTATGGAAGGGAACCGTGTGCGAGAGGTCTCATCTATTCCGAATTAAATACTATGGAAGCTTTGACAAGCCATTGGGTCGGTTCCTGCGAGACCATTTATTTGATCAGAGTTATCGATGTGATTCTTGTGATATGCCATCGGAAGCACATGTGCATTGCTATACTCATCGACAGGGAACACTTACCATATCGGTAAAAAAACTACCAGAAGTTATCCTGCCTGGTGAAAGGGACGGAAAGATTTGGATGTGGCACAGGTGCTTGCGGTGTCCGAGAATCAGTGGCTTTCCTCCTGCCACACAGAGAATAGTAATGTCTGATGCTGCTTGGGGTTTATCATTTGGAAAGTTTTTGGAGCTCAGTTTCTCAAACCATGCTGCAGCCAGCAGAGTGGCAAGCTGTGGCCATTCTCTACACAGAGATTGTCTTCGCTTTTATGGATTCGGGAAAATGGTTGCTTGTTTTCGATATGCATCAATTGATGTTCACTCAGTCTACCTTCCTCCACACAAACTGAATTTTGATCACGGGAAACAGGATTGGATACAAAAAGAATCAGACGAGATGGTCAATCGAGCCGAGCTTTTATTCTCCGAAGTACTCAATTGTCTAAGTCAAATTGGAGAGAAAAAATCTAATTCAGTCCAAATCATTAGTGGTCATAAAACACCGGAATTAAGAAGTCAAGTTGCTGAACTGGAAGGAATGTTGCAAAGGGAGAGACTGGAATTCGAGGAAACTCTTAAAAAGATTTTGAACCAAGAAAAGAGAAATGGCCAACCTGGAATTGACATTCTGGAAATTAATCGACTGTGGAGGCAGTTACTTTTCCAATCATATGTCTGGGACCACCGCCTTGTGTATGCAGACAGCTTAGCTAATTCCAACAACGAAACTGGTTTAAGCAGTTCAACTTCAGAAGATAAGGAAATACCTATAGAAGAAAATTTGATGACAGGGGTCTCCTTGGCAGGAAGGGGATTCAGCAGTGCTGACTCTATTCACGGACTAGTTGATGCCAAAAGTTCCCAATCAGATGCATTTCATCAAGAAATTGACGTGGCCAAAAATAAACAAAACGAGAAAGAACAGCCCAATCTTTCTCTCAGCAAAAGCGTAAATGATCAATCGGACCATTTAGAACTTGAATTAGGTGTTCGTAGAGCTCTCTCGGAGGGGCCATTTTCCGTTGTACCTAGTTTGTCTGATACACTTGATGCAAAATGGACAGGTGAAAACCAGTCAGGAATTGGAATTCAAAAGGATAGCACTTCTGGAAACCCTGATATATCTATTGCAGATGCTTTGACGACCACTACACAAAGAGAAACATACTATCTCGGGGATCGCACAGAAGACCAGAATGGTTCCAAGAGCATCTTTTCTTCTCTTAAAAGTTATGATAATTTGGAAGACTCTTTAAGTTGGTTAGGGATGCCTTTTGTAAACTTCTATCGCCAATTTAACAAGAGCTTGTTTGCTAGTAGCCAGAAGATTGAAAAACTAGTGGACTACAATCCCGTTTTTGTATCGTCATTCGGGAAACTGGGACTCCAAGGTGGTGCAAGGATGCTTATGCCGATCGGTGTTAATGACACTGTAATTCCAATATATGATGATGAACCTTCGAGTATTATCGCTCATGCCTTGATGTCATCGCAATATCATTCCCAGTTATCTGATGAATTAGAGAGACCAAAAGATGGATCTGAATTGGCGTCATCTTATTTTTCGGATTCTGGTGCCTTCCAGTCATTTTCATCGGCCGATGATACAGCTTTTGATTCTCAGAAAAGTTTTGGATCGGTCGAGGATATGATATTGTCCATGTCTGGTTCTCGTAACTCATCAATGTTCGACCCAGTGATGTATACAAAAGCTATGCATGCCAGAGTTTCCTTTGGAGAAGACGATCCCCTTGCAAAGGTAAAATATTTTGTGACTGTGTACTATGCGAAGCGATTTGAAGCCTTAAGAAGAGTCTGTTGTCCTTCAGAGCTTGACTACATAAGATCTCTAAGTCGCTGTAAGAAATGGAGAGCTCAAGGTGGGAAGAGTAATGTATTCTTTGCAAAAACCTTGGATGATCGGTTTATCATCAAACAAGTTACCAAGACAGAACTTGAATCGTTCGTTAAATTTGGTCCTGAATACTTCAAGTACCTTTCCGAATCCATAGGAACAGGAAGTCCAACATGCCTGGCAAAGATTCTTGGCATATACCAGGTTACTTCAAAGCATCTCAAAGGAGGTAAAGAGTCAAAGATGGACGTTTTGGTTATGGAGAATCTTCTATTTAGGAGGACCGTGACCCGACTTTACGATCTCAAAGGATCTTCTAGGTCTCGGTATAATCCAGATAGTACAGGGAAAAACAAAGTTCTGCTGGACCAGAACTTGATTGAAGCAATGCCAACTTCTCCTATTTTTGTGGGAAACAAAGCAAAACGATTGTTAGAAAGAGCCGTCTGGAATGATACTGGTTTTCTTGCATCAGTTGATGTAATGGACTATTCATTACTTGTTGGGGTGGATGAAGAAAAAGATGAGTTAGTTCTTGGAATAATCGATTTCATGAGGCAGTATACATGGGACAAGCATCTTGAAACATGGGTGAAAGCTTCAGGAATCCTTGGAGGACCAAAGAACACACCACCAACAGTTATATCACCAAAGCAGTACAAGAAAAGGTTCAGAAAAGCAATGACCACTTACTTTCTCATGCTTCCAGATCAGTGGTCTCCACCATCTATTATTCCTAGTCATTCTCAGTCTGATTTAGTTGAAGAAAAAGAAAAAGAAAACACAGGAAAAGAAAACAATACACAGTCTAGGACTTTAGCTGAATGA 5463 0.4131 MDAIDKAFSELVSIIKSWIPWQSEPANVSRDFWMPDHSCRVCYECDAQFSLFNRRHHCRLCGRIFCSKCTTNSVPAPFSGSQRNSWDEWEKIRVCNYCYKQWEQGIVSFEKSGQASNLERTMSATSVASSKTSATGNSSNITICSMPYSVGSYKQKQQSSCVNNMHQSPKRGKETDREGLSSIGGRNIDLVEDLGDPLTKQYGFSMSRSDDDEDEYDVYRSDSDIRQYPQVNSYYGQAVLDGINNIDGSQNVPNGENIDAKLSSNYNFDDSGLEGPPVIAKNGDEPDICDENDAPSSLYVSEDVDAEPVDFENNGLLWLPPEPEDEEDDREAIMYDDDDDNDGNGTGEWGYLRSSSSFGSGEYRQRDRSNEEHKKVMKNVVDGHFRALVSQLLQVENLPVEDNNKNSWLEIIISLSWEAANLLKPDMSKGGGMDPAGYSKVKCIARGSRIESVVVKGVVCKKNVAHRRMTSKVDKPRLLILGGALEYQRVTNLLSSVDTLLQQETDHLKMAVAKIASHQPSILLVEKSVSRYAQEYLLAKDITLVLNVKRPLLERLARCTGTQIVPSIDHLSSQKLGYCETFHVEKFLEDLIVAVPGAKKPMKTLMFFEGCPKPLGCTILLRGADMDELKKVKHVVQYAVFAAYHLAMETSFLADEGVSLPELPLNSLALPNKSSSIQRSISTVPGFSVPGNEKSQIHDPNNGPRRTKSVTVTELVSPVCNTGSLSNGYSQSLPSGSNLNHSAALYSSIVVSGDDIPELHPKKLLSKQPLVKETSVVDNTLVVMDDTFVNGTETSEQIYQGILAENSRNGYNQIYANKLSALGSSLSPNYAQNHTEKKLVTTNEEPVPQKEEFPPSPSDHQSILVSLSSRCVWKGTVCERSHLFRIKYYGSFDKPLGRFLRDHLFDQSYRCDSCDMPSEAHVHCYTHRQGTLTISVKKLPEVILPGERDGKIWMWHRCLRCPRISGFPPATQRIVMSDAAWGLSFGKFLELSFSNHAAASRVASCGHSLHRDCLRFYGFGKMVACFRYASIDVHSVYLPPHKLNFDHGKQDWIQKESDEMVNRAELLFSEVLNCLSQIGEKKSNSVQIISGHKTPELRSQVAELEGMLQRERLEFEETLKKILNQEKRNGQPGIDILEINRLWRQLLFQSYVWDHRLVYADSLANSNNETGLSSSTSEDKEIPIEENLMTGVSLAGRGFSSADSIHGLVDAKSSQSDAFHQEIDVAKNKQNEKEQPNLSLSKSVNDQSDHLELELGVRRALSEGPFSVVPSLSDTLDAKWTGENQSGIGIQKDSTSGNPDISIADALTTTTQRETYYLGDRTEDQNGSKSIFSSLKSYDNLEDSLSWLGMPFVNFYRQFNKSLFASSQKIEKLVDYNPVFVSSFGKLGLQGGARMLMPIGVNDTVIPIYDDEPSSIIAHALMSSQYHSQLSDELERPKDGSELASSYFSDSGAFQSFSSADDTAFDSQKSFGSVEDMILSMSGSRNSSMFDPVMYTKAMHARVSFGEDDPLAKVKYFVTVYYAKRFEALRRVCCPSELDYIRSLSRCKKWRAQGGKSNVFFAKTLDDRFIIKQVTKTELESFVKFGPEYFKYLSESIGTGSPTCLAKILGIYQVTSKHLKGGKESKMDVLVMENLLFRRTVTRLYDLKGSSRSRYNPDSTGKNKVLLDQNLIEAMPTSPIFVGNKAKRLLERAVWNDTGFLASVDVMDYSLLVGVDEEKDELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNTPPTVISPKQYKKRFRKAMTTYFLMLPDQWSPPSIIPSHSQSDLVEEKEKENTGKENNTQSRTLAE 1820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01170 1820 Pfam FYVE zinc finger 33 102 IPR000306 GO:0046872
Vifa4g01170 1820 SUPERFAMILY SAICAR synthase-like 1509 1777 - -
Vifa4g01170 1820 Pfam TCP-1/cpn60 chaperonin family 392 650 IPR002423 GO:0005524
Vifa4g01170 1820 Coils Coil 1101 1128 - -
Vifa4g01170 1820 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 36 103 IPR017455 -
Vifa4g01170 1820 MobiDBLite consensus disorder prediction 163 186 - -
Vifa4g01170 1820 Gene3D - 1636 1778 - -
Vifa4g01170 1820 MobiDBLite consensus disorder prediction 334 353 - -
Vifa4g01170 1820 SMART PIPK_2 1487 1778 IPR002498 GO:0016307|GO:0046488
Vifa4g01170 1820 SUPERFAMILY GroEL apical domain-like 451 623 IPR027409 -
Vifa4g01170 1820 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase isoform X1 450 623 - -
Vifa4g01170 1820 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1453 1777 IPR002498 GO:0016307|GO:0046488
Vifa4g01170 1820 MobiDBLite consensus disorder prediction 1796 1810 - -
Vifa4g01170 1820 MobiDBLite consensus disorder prediction 1790 1820 - -
Vifa4g01170 1820 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 1472 1634 IPR027484 -
Vifa4g01170 1820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 107 IPR013083 -
Vifa4g01170 1820 SMART fyve_4 28 104 IPR000306 GO:0046872
Vifa4g01170 1820 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1721 1775 IPR002498 GO:0016307|GO:0046488
Vifa4g01170 1820 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1552 1719 IPR002498 GO:0016307|GO:0046488
Vifa4g01170 1820 CDD PIPKc_PIKfyve 1514 1777 IPR044769 GO:0000285
Vifa4g01170 1820 Gene3D GroEL 451 623 IPR027409 -
Vifa4g01170 1820 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 1636 1778 - -
Vifa4g01170 1820 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 22 1790 - -
Vifa4g01170 1820 SUPERFAMILY FYVE/PHD zinc finger 31 104 IPR011011 -
Vifa4g01170 1820 MobiDBLite consensus disorder prediction 688 707 - -
Vifa4g01170 1820 CDD Fab1_TCP 386 657 - -
Vifa4g01170 1820 CDD FYVE_PIKfyve_Fab1 32 100 - -
Vifa4g01170 1820 FunFam 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B 24 109 - -
Vifa4g01170 1820 FunFam 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B 1478 1634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01170 Vifa-Chr4 351901798 351910710 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01170 2 1810 EF-hand Containing Proteins AT3G14270 58.441 0.0 2017
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01170 K00921 - gmx:100819364 2884.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01170 4 351901798 351910710 Vifa4g01170 4 351901798 351910710 ECH