Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01161 ATGGCGGATAAATCATGCATCAAGCGTCTTCAGAAGGAGTATAGAGCCCTTTGTAAAGAGCCAGTTTCCCATATTGTGGCCCGTCCTTCACCAAGTGATATTCTTGAGTGGCACTACGTATTGGAAGGAAGTGAGGGAACACCTTTCTCAGGTGGTTTTTACTATGGAAAAATCAAGTTTCCTCCAGAATATCCATATAAACCTCCTGGAATCAGCATGACAACACCTAATGGGCGGTTCATGACACAGAAAAAGATCTGTTTATCAATGAGTGATTTTCATCCTGAAAGTTGGAATCCAATGTGGTCTGCATCAAGCATACTTACCGGGCTTCTTTCATTTATGATGGACACCAGTCCAACCACCGGCAGTGTAAACACCACTACTGCCGAGAAGCAGCGTCTAGCAAAATCTTCACTCACTTTCAATTGCAAGAATGCTACATTCAGGAAAATGTTCCCCGAGTACGTGGAGAAGTACGAACAGAAGCAGCTTTCTGAGCAAACTGCTTCTGAGCAGCGGGTATCATCAGACGCACGTCATGATAAAAGTTCAAATTCTATTTCCGAAAGGAATTCAAACTCCACAGGAGAAGACACGAAAGGGGTAGAGGGATTAAAGGACATGAGGAGAAACAGAAAACAGGCATTTCCAACATGGGTGATGTTATTACTCTTCTCCATCTTTGGGGTTGTTATGGCATTACCTCTACTTCAGCTGTGA 723 0.4343 MADKSCIKRLQKEYRALCKEPVSHIVARPSPSDILEWHYVLEGSEGTPFSGGFYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSASSILTGLLSFMMDTSPTTGSVNTTTAEKQRLAKSSLTFNCKNATFRKMFPEYVEKYEQKQLSEQTASEQRVSSDARHDKSSNSISERNSNSTGEDTKGVEGLKDMRRNRKQAFPTWVMLLLFSIFGVVMALPLLQL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01161 240 SUPERFAMILY UBC-like 5 157 IPR016135 -
Vifa4g01161 240 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 7 164 - -
Vifa4g01161 240 SMART ubc_7 8 162 - -
Vifa4g01161 240 MobiDBLite consensus disorder prediction 164 206 - -
Vifa4g01161 240 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 162 IPR000608 -
Vifa4g01161 240 Pfam Ubiquitin-conjugating enzyme 9 131 IPR000608 -
Vifa4g01161 240 FunFam Ubiquitin-conjugating enzyme E2 34 1 177 - -
Vifa4g01161 240 CDD UBCc 7 157 IPR000608 -
Vifa4g01161 240 Gene3D Ubiquitin Conjugating Enzyme 1 178 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01161 Vifa-Chr4 350940501 350942607 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01161 1 240 Miscellaneous Gene Families AT1G17280 75.833 2.42e-139 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01161 K04554 - gmx:100778181 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01161 4 350940501 350942607 Vifa4g01161 4 350940501 350942607 ECH