Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01138 ATGGTGGTAGCTGCTGGCTCCAAGTTCAACAATTTGAGAAGAGGGAGCAGTGGTTCTTGTTCTTCTCATAATGTTGTTATCAATGACTATAGTAATAATAATAATAATAACAACTGTGATGGAGAGTTTTCAAGGATTAATAAAAGTGGTTGTTTTTCATCAATGGTGGAGGGTGTTGATAAAGACTCTTCCTGTGTTTCGTTCACTACTTTTAATATCCTTGCTCCTATTTACAAACGGGTTGATCCACAGAATCAAGGACTTAGAGAAAGTGATTTCAGATCATTTTGGTTAGCTAGGAATCAAAGGATTCTTGATTCATTGCTTTCTGAATCATCTTCTATTATGTGCTTACAGGAATTTTGGGTTGGAAGTGAAGAGCTAGTTCACATGTATGAGGAGAGACTTGGGGATGCTGGCTACCAACTCATCAAGCTTGCTCGAACCAACAACCGTGGAGATGGTCTGCTGACTGCTATACGCAACGATCATTTACGTATCATAAATTATAGAGAATTGCTTTTCAATGATTGCGGTGACCGTGTTGCTCAGTTGTTACATGTTCGATCAGTCAATCCCATTTCACAAAACCAAAATGACAGTGTTCACCAAGAGTTTCTGATTGTGAATACACACTTGCTTTTTCCTCATGATTCTAGTCTGTCTATAGTGAGATTGGATCAGGTTTATCAAATATTACAATATGTGGAGTTGTATCAGAGAGAAAACAGGCTCAAACCACTGCCTATTATTCTATGCGGCGATTGGAACGGAAGCAAGCGTGGACATGTTTACAAGTTCCTTAGGTCGCAGGGTTTTGTATCATCATATGATATTGCAAATCAGTACACTGATAGTTATGCAGATGCACACAAGTGGGTTAGTCACAGAAATCATAGAGGAAATATATGTGGCGTTGACTTCATTTGGCTTTGTAATCCTAACCAAGCGCGCAAGCCCTTGAAAACAAGTTGGGCGGAAGCTGTATTTAGTATACTAAAGTTCCAGCTTCGGAAGGGCAACAACTGTGTTGATTCCGTTTCATATGTTAGTTTTTCTGAAGCACTCCATAAGGTTAAGTTAATTGGCGTGCCTTATGGACTATGCTTTCAACAGTTGCAAGATCTATGGAATCAAGCTGATGTAGATGGAAATGGTGTCATTGACTTTGAAGAATTCAAGCAAAAGATTTGGAATTCTACATGTTCAGAGCATGTGTTGGAGAATTTCAATGGGTGCGTGGAGAATTCTAATACTGAGCAGGAGCAACAGGCCATTGGTTTTAAGGTGAAGAATGCGATGTTGTTTCCGCGTGAAATGGAGAAAGGACTTTGGCCTGAAGATTACTCTCTTTCTGATCATGCAAGGTTAACTGTTGTATTTTCACCAACAAAGATGTCACGCCCTTAG 1410 0.395 MVVAAGSKFNNLRRGSSGSCSSHNVVINDYSNNNNNNNCDGEFSRINKSGCFSSMVEGVDKDSSCVSFTTFNILAPIYKRVDPQNQGLRESDFRSFWLARNQRILDSLLSESSSIMCLQEFWVGSEELVHMYEERLGDAGYQLIKLARTNNRGDGLLTAIRNDHLRIINYRELLFNDCGDRVAQLLHVRSVNPISQNQNDSVHQEFLIVNTHLLFPHDSSLSIVRLDQVYQILQYVELYQRENRLKPLPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIANQYTDSYADAHKWVSHRNHRGNICGVDFIWLCNPNQARKPLKTSWAEAVFSILKFQLRKGNNCVDSVSYVSFSEALHKVKLIGVPYGLCFQQLQDLWNQADVDGNGVIDFEEFKQKIWNSTCSEHVLENFNGCVENSNTEQEQQAIGFKVKNAMLFPREMEKGLWPEDYSLSDHARLTVVFSPTKMSRP 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01138 469 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
Vifa4g01138 469 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 13 461 - -
Vifa4g01138 469 SUPERFAMILY DNase I-like 59 289 IPR036691 -
Vifa4g01138 469 SUPERFAMILY EF-hand 347 397 IPR011992 -
Vifa4g01138 469 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
Vifa4g01138 469 Gene3D Endonuclease/exonuclease/phosphatase 53 467 IPR036691 -
Vifa4g01138 469 FunFam Putative calcium-binding protein 49 465 - -
Vifa4g01138 469 Pfam Endonuclease/Exonuclease/phosphatase family 97 280 IPR005135 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01138 Vifa-Chr4 345073936 345077097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01138 131 466 EF-hand Containing Proteins AT1G02270 63.037 1.95e-160 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01138 - - psat:127076166 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01138 4 345073936 345077097 Vifa4g01138 4 345073936 345077097 ECH