Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01114 ATGCCTTTCTCTGCAACCAAGTTTTCGCACTCTCTTCTTGCGGTTCCTGTGAACTCCTCAACTCCAAGATCCAATGAGAAATCAATCTCTTTCTCTTCTGATCTCTTCAAACACAACCCTTCTTCTTCATCTTTCCTTGGATCCACAAAGTTTCTTCGTTTCAGTTCTCTTACTAAGCCGTTTCTTCATCGCCGTTTATCATCGCCTGTTGCTGTTCTTCTTCAACAGACCTCCAATTTGCTTATTACTAAAGAGGAAGGGCTAGTGCTTTATGAAGACATGGTATTAGGGAGGTCCTTTGAAGACAAGTGTGCTGAGATGTATTATAGAGGCAAAATGTTCGGTTTCGTTCACTTGTACAACGGCCAAGAAGCTGTGTCAACTGGATTCATCAAGTATTTGAGGAAAGAAGATTGCATCGTGAGCACATACAGAGACCATGTTCATGCGTTGAGTAAAGGGGTCCCTTCTCGAGCTGTGATGAGTGAACTCTTTGGGAAGGCAACAGGATGCTGCCGAGGTCAAGGTGGTTCGATGCATATGTTCTCAAAAGAACACAATGTGCTTGGCGGTTTTGCATTCATCGGTGAAGGAATTCCAGTGGCCACCGGTGCAGCGTTTTCCATGAAGTACAAAAGAGAGGTGTTGAATCAGGCGGATTCTGATAACGTGACATTGGCGTTTTTCGGAGATGGGACTTGTAATAACGGACAGTTCTTCGAGTGTTTGAATATGGCTGCTTTGTGGAAATTGCCGATAGTGTTTGTAGTGGAAAATAATTTGTGGGCCATTGGGATGTCGCATCTCAGGGCAACTTCGGATCCTCAAATATGGAAAAAAGGTCCAGCTTTCGGAATGCCGGGAGTTCATGTCGACGGGATGGATGTTTTGAAGGTCAGAGAGGTGGCGAAGGAGGCAATTGATAGAGCTAGAAGAGGAGAGGGACCGACTCTTGTTGAATGCGAGACTTATAGATTTAGAGGACATTCATTGGCTGATCCTGATGAGCTTCGTAACCCTGCTGAGAAGGAACACTATGCTGGTAGGGATCCCATCACTGCATTGAAGAAATACCTTTTTGAGAACCAACTAGCCACTGAACAAGAATTGAAAACAATAGACAAGAAAATCGACGAGATCCTTGAAGAGGCCGTTGAGTTTGCCGAAAAGAGCCCTCAGCCACAGCGCAGCCAGCTTCTAGAGAATGTGTTTGCCGATCCGAAAGGTTTTGGAATTGGACCGGATGGCAGGTATAGATGTGAAGATCCAAAGTTTACAGAAGGCACTGCTCATGTCTAA 1299 0.4503 MPFSATKFSHSLLAVPVNSSTPRSNEKSISFSSDLFKHNPSSSSFLGSTKFLRFSSLTKPFLHRRLSSPVAVLLQQTSNLLITKEEGLVLYEDMVLGRSFEDKCAEMYYRGKMFGFVHLYNGQEAVSTGFIKYLRKEDCIVSTYRDHVHALSKGVPSRAVMSELFGKATGCCRGQGGSMHMFSKEHNVLGGFAFIGEGIPVATGAAFSMKYKREVLNQADSDNVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIDRARRGEGPTLVECETYRFRGHSLADPDELRNPAEKEHYAGRDPITALKKYLFENQLATEQELKTIDKKIDEILEEAVEFAEKSPQPQRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01114 432 Gene3D - 54 413 - -
Vifa4g01114 432 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 76 415 - -
Vifa4g01114 432 NCBIfam pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 85 405 IPR017597 GO:0004739|GO:0006086|GO:0043231
Vifa4g01114 432 Pfam Dehydrogenase E1 component 93 395 IPR001017 GO:0016624
Vifa4g01114 432 FunFam Pyruvate dehydrogenase E1 component subunit alpha 61 413 - -
Vifa4g01114 432 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 77 407 IPR029061 -
Vifa4g01114 432 CDD TPP_E1_PDC_ADC_BCADC 90 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01114 Vifa-Chr4 336417579 336420074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01114 43 432 Acyl Lipid Metabolism Gene Families AT1G01090 82.161 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01114 K00161 - gmx:100811207 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01114 4 336417579 336420074 Vifa4g01114 4 336417579 336420074 ECH