Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01113 ATGGAGCTCGACCTCCGTTCTTTCCTTCCCGACGACACCGACGCCGATGTCCACGTCACCCACCACCGCACCGTCGACGAAATTCTCAACGACTGCGATACTTCCTCATCCTCATCATCACCCTCTCCTCCTTCCTCTCCTTCTCACAATACCAAACCCACACAATTCCCTCAACCCGTACCCGTTTCCCTTCCCCGGGTCAAACCCGATAAACCTCCCCGCCCTTTCTCTTCCCTATTCGGCCGTGTCACACCCAATGCTAAACCCGGTGCCGCTCTTGCTGCCGCTGCCGCTGCTTCTAGATCCGTCCCGACGCCACATGCGGCGGCGATTATATCCCGGAGGAAGAGTTCACAGTCGATCAGAACTGAATCGGATGATTCTGATAAAGGTAGTGAATTGGGAGAGAAATTTGAGTTTGTGGAGAGGAGAATTGAGAGCAGTGAGAGTGTTTGTTCTGTTGATGAGGGTGAAATTGCAGCAGTTGAAGTGAATGGTGCTGATATTCAGGTGAAGAATGATTCTAGTGTTGTGAGTGAGGGGAAAAGTGATTTAGATGAGTGTTCTGTTTCTCATTCATTGAATGATGTTGAAAATGGTCATGATCATGATCAGGGTTTGAATTTGAACTTAAATTCGGTTTCGACACCTTTTGATGTTGATGATGACGATAATGATGATGGTTTTGGTGAAAAAACTAGTCGAGTTGAAGAAACTGAAGAAGAAATTGTAAATGGTGTTGGTGTTAGTGGTGGTTCTGTTGGAGGTATTGAGAATGAATTTAGTGGTGGTGGTGATGATGGTGGTGGTGGTGATGATGGTGGTGGTGGTGATGATGATGGTGGTGGTGGTGATGATGATGGTAGTTCAATAGGTGATGTATTTGAACTAGTAGAAGAGACACTTGAGGAATTGGAAAGTGTAAATCTCAAAAAGAAAAAATCCGAGTCTTTAAAGAAGCCACTTGATTTAGCAGAGGAATTGGAGAAAAAGAATGCTTCAACTGGTTTGCATTTGGAAGAGGGTGCAGCTGCGCAGCCAATGCGGCTTGAAGGCGTTCGGAGAGGGTCTATTACATTGGGATATTTTGATGTTGATGCTGATAATGCTATCACAAGGGCCATTTCATCGCAGACATTTAGGCGTGATCATGGTTCTGCTCAAGTCTTGGTGGTTCATGCTAATTTCATTGCAGTTGGAATGACAAAAGGGCTCATTGTTTTAGTGCCGAGTAAATATTCCATTCATCATGCGGATAATACAGATGGAAAGATGTTGATGCTTGGTATACAAGGTGATCGATCACACGCTCCAGTGACGTCCATGTCTTTCAATCATCAAGGAGATCTTCTTTTAGCCGGTTATGGTGATGGTCATGTTAAACTTTGGGATACACAGAAAGGGGTTGTGGTTAAAGTTATTAGTGGAGAACATACAGCCCCAGTGGTACATGCTTTTTTTCTAGGACAGGATCCTCAGAATACTCGTCAATTTAAAGCAGTTACAGGTGATTGTAAGGGTCTGGTTCTCTTACATCATATCTCGTTGGTTGTTTTGATCAATAGGTTCAACGTCAAAACTCAGTGTCTTCTTGATGGGCAAAGAACGGGCTTGGTGCTATCTGCTTCACCACTCCTTTTAGACGAATTCGGTGGAAGTGCCTCATCTTATTCCCAGGGAAACGCCATGGTCTCAACCAGCAGTATAAGTAGCATGGTCGGAGGTGTTGTCGGGGCTGATGCAGGTTGGAAACTCTTCAATGAAGCCTCTTCTCTGGCTGAAGAAGGTGTGGTTGTATTTGTCACCCATCAAACTGCTTTGGTGGTACGGCTCAGTCCTTCATTGGAAGTCTATGCTCAACTCTCAAGGCCAAATGGAATCCGGGAGGGTTCTATGCCATATACTGCATGGAAGCACATGCCACAAACAAGTAGTTCTACTGAAGCTGTTGAAAGAGTTTCTTTGCTTGCAATTGCTTGGGAACGGAAAGTTCAGGTCGCAAGATTGGTCAAATCAGAATTAAAAGTATATGGAGAATGGTCTCTTGACAGTGCGGCTATAGGTCTGGCCTGGTTAGATGATCAGATGCTGGTAGTGCTCACTTCAACCGGACAGCTGAATTTATTTGCTAAAGATGGAACTGTGATTCATCAAACAAGTTTTGGTGTGTTTCATCAAACTAATTTTGGTGTAGAAGGTATTGGAGGAGAAGAACTACTTTCATATCATACTCACTTCATCAACATTTATGGGAATCCAGAGAAAGCTTATCATAACTCCATAGCTGTAAGAGGAACTTCTATTTATGTACTTGGTCCAACACATCTTGTTGTTTCTCGTCTTCTCCCTTGGAAAGAACGTATCTTGGTTTTACGAAAAGCAGGTGACTGGATGGGTGCCTTGAACATGGCAATGACTCTTTACGATGGCCATGCTCATGGGGTTGTTGATCTACCTAGAACCTTGGATGCAATACACGAGGCTATAATGCCCTTCTTGGAGGAATTGCTTACATCATATGTTGACGAAGTGTTCTCCTATATTTCAGTGGCTTTCTGCAACCAAATTGGAAAACCTGATCAATCCAATGGATCAGATAGTAGAAGTAATAATTCAGTACATTCTGAAATAAAGGAACAATACACACGGGTTGGTGGAGTTGCTGTTGAATTTTGCTGTCATATAAAACGGACAGACATCCTTTTTGAGAAAATTTTCTCCAAGTTCGTGGATGTGCATGTTCAACAGAGAGAAACATTTTTGGAGCTTCTGGAGCCATATATTTTAAAGGACATGCTTGGATCTCTACCTCCTGAGATTATGCAAGAACTGGTAGAGTATTATAGCACTAAAGGGTGGTTACAGCGTGTTGAGCAATGTGTGCTTCACATGGATATTTCATCCTTGGATTTTAATCAGGTTGTTAGATTATGCCGGGAGCATGGACTATATAGTGCTCTGGTGTATCTCTTTAATAAAGGATTAGATGATTTTAGAGCACCTCTTGAGGAGCTCTTTGCAGTTCTACAAAATAGTCCGAAGGAAAATGCTAAGGCACTTGGGTATAGAATGCTGGTTTATCTCAAGTACTGTTTTATAGGTCTTGCCTTTCCTCCAGGCCATGGAACTATTCCTACTACGCGGTTGCCATCTCTTAGAAAAGAACTTGTAGAGTTTTTGCTAGAGGGTTCCAGTGCTACAAGATCAAGGACTGCTTCAGGTTCCGTGTCCAAACAGCCTTACCTGAATCTATATCTTCTTCTAGAGTTAGACACCGTAGCTACATTAGATGTCCTCCGATGTGCTCTCATGGACGATAAAATTTCAAATTCCAGCTCATCTTCACTGGATTCAGCTGACAAACCCATTGAAGAAGAAAACAAAGAAAATAATAATGTTACTGAAACTGAAAATATTTTGGTTCAGAATACAGTGGATGCTCTTATTCAGATAACTGATATGAATGTTGCTCCATCGGATACAACCTCTAGTAGTGGTGATGAGGGATTAACCAAAGAGTGGCCTTCAAAGGAAAAAGGTTGTCTGTTTGAGTTCATTGCATATTATGTTGCTCGCCAAAGAGCTAAAGTTTCAAAGGGAATGCTTTGTCGAATATTGGAATATCTGACATTGGATAATCACGTCTTAGCTAATGTTTCTTCTCATAGTTCAACGCCAAAAAATAGAGAGAAGCAAGTGCTTGCACTTCTGGAAGTAGTTCCTGAGTCCGATTGGGATGTTCCATTTTTGCTAGACTTATGTGAGAGAGCCAAATATTATCAGGTTTGTGGACTGATTCATTTCATCAGACATGAGTATGTGGCTGCATTGGATAGCTATATGAAGGATGTAGATGAGCCTGTTCATGCCTTCTCCTTTATCAACAAAGCATTCTCACAGTTGATTGGCAATGACCGTGCTGCTATTCGATCAGCAGTCCTATCTCGAATTCCTGAATTGGTTGAACTAAGCAGGGAAGGTGCATTCCATATAGTTACCAGACATTTCACTGATGAAAGTTCCCATATCATCACTAAACTTCAATCTCATCCAAGAAGTCTTTTCCTTTATTTAAAGACACTCATTGAGCTTCATTTATTTGGCACCCTAGACCTGTCTAATTTGACAAAGGATGTTTTCACAAACCCCCCTAATGGAAAGCAGGATAAGGATCTCCCACAAGGAATCCACGATTACTTAGAAAATATATCCGATTTCCCCAAGTATATGCGTGAAAATCCTAGTCATGTGCCTGATGATCTTATTGAGCTTTACCTAGAGCTGTTATGCCAGTATGAACGGGGTTCAGTCCTAAAGTTTCTAGAAATGTTTGATAGCTATCGCGTGGAACATTGTTTACGCCTGTGCCAAGAATATGGCATTATTGATGCTGCTGCTTTCTTATTGGAAAGGGTTGGTGATGTTGGTAGTGCTCTTTCACTTACACTTTCTGATCTGAATGATAAATTTGTTGAGCTTGATGCTGCTGTGGAAGCTGTAGTGTTAAACCATCCCAAGCTTGATTCTTCCCATATGGAAGTATTCAACACTGTTTTAAGAACAAAAGAGGTGAATGTCATGTATGAGTTATTGCATGCATGTATCGGTCTGTGTCAGCGGAACACCCCTCGTCTAAATCCTGAGGAGTCAGAGGCACACTGGTTTAAATTACTTGACTCGTTTTGTGACCCATTGATGGATTCATATGTCGAAGAGCGAGAATATGAAAGAAAAAATTATTTTGGCGTGCTAGCTGGATCAGCAGATTCACAATTGGACAAAGACACCTATAAAAGTAGTTGGAAGATTTCTCAGTCCGGAAATGGTGATCTCGAGAGAAAATTGTTATCCCAATTCATTAAAGAGATTGTTGAGGGAATGATAGGTTATGTTCACCTTCCAGCTATCATGTCCAAACTATTGTCTGATAATGGTAGTCAAGAATTTGGCTATTTTAAACTTACCATATTAGGGATGCTGGGAACATATGGCTTTGAAAGAAGAATTCTGGATGCTGCAAAATCCTTGATAGAGGATGATACATTCTATACGATGAATTTACTCAAGAAAGGGGCCTCCCATGGATTCGCTCCCAAGAGTTCAGTGTGCTGTATTTGTAATAGCCTCCTTATAAAGAATTCGGTTACCACCGGAATTAGAATTTTCAACTGTGGCCATGCAATTCATCTCCACTGTGAAGCCTCTGAAGTCGAGTCGTCAAGCAAAGGATCTTCATCTGGATGCCCTGTATGCATGCCTAACCAAAAACCCCAGAAGTCTAGAAACAAATCCATCGATACAGAGAATGGTTTGGTCAATAGATTCTCATCAAGGCGCCAACCCACTCATTATGGAAGTACAATTCATCACCATGACAACGATTTATCAGAGAATATCTATGGAGGACAACAACAGATATCACGGTTTGAGATCTTGAGCAGCTTGCAGAAAAACCAAAGATTTATGCAATTTGAAAACTTGCCTCCATTGAGACTTGCCCCACCTGCTGTATACCACGAAAAGGTAAGTAAAGTAGCACACTATCAGACAGGAGAAAGTAGCAACAGTTCTGCAATTATAGAGAAAAATAATCGTCACAAACAAAACCGGGAGCTGAGAGTTAGAGGTTCTTCGATTCGTTTTCCTTTGAAATCAAGTTTTTTTGGCAAGGAAAAGACGAATAAGCGATGA 5691 0.4171 MELDLRSFLPDDTDADVHVTHHRTVDEILNDCDTSSSSSSPSPPSSPSHNTKPTQFPQPVPVSLPRVKPDKPPRPFSSLFGRVTPNAKPGAALAAAAAASRSVPTPHAAAIISRRKSSQSIRTESDDSDKGSELGEKFEFVERRIESSESVCSVDEGEIAAVEVNGADIQVKNDSSVVSEGKSDLDECSVSHSLNDVENGHDHDQGLNLNLNSVSTPFDVDDDDNDDGFGEKTSRVEETEEEIVNGVGVSGGSVGGIENEFSGGGDDGGGGDDGGGGDDDGGGGDDDGSSIGDVFELVEETLEELESVNLKKKKSESLKKPLDLAEELEKKNASTGLHLEEGAAAQPMRLEGVRRGSITLGYFDVDADNAITRAISSQTFRRDHGSAQVLVVHANFIAVGMTKGLIVLVPSKYSIHHADNTDGKMLMLGIQGDRSHAPVTSMSFNHQGDLLLAGYGDGHVKLWDTQKGVVVKVISGEHTAPVVHAFFLGQDPQNTRQFKAVTGDCKGLVLLHHISLVVLINRFNVKTQCLLDGQRTGLVLSASPLLLDEFGGSASSYSQGNAMVSTSSISSMVGGVVGADAGWKLFNEASSLAEEGVVVFVTHQTALVVRLSPSLEVYAQLSRPNGIREGSMPYTAWKHMPQTSSSTEAVERVSLLAIAWERKVQVARLVKSELKVYGEWSLDSAAIGLAWLDDQMLVVLTSTGQLNLFAKDGTVIHQTSFGVFHQTNFGVEGIGGEELLSYHTHFINIYGNPEKAYHNSIAVRGTSIYVLGPTHLVVSRLLPWKERILVLRKAGDWMGALNMAMTLYDGHAHGVVDLPRTLDAIHEAIMPFLEELLTSYVDEVFSYISVAFCNQIGKPDQSNGSDSRSNNSVHSEIKEQYTRVGGVAVEFCCHIKRTDILFEKIFSKFVDVHVQQRETFLELLEPYILKDMLGSLPPEIMQELVEYYSTKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYSALVYLFNKGLDDFRAPLEELFAVLQNSPKENAKALGYRMLVYLKYCFIGLAFPPGHGTIPTTRLPSLRKELVEFLLEGSSATRSRTASGSVSKQPYLNLYLLLELDTVATLDVLRCALMDDKISNSSSSSLDSADKPIEEENKENNNVTETENILVQNTVDALIQITDMNVAPSDTTSSSGDEGLTKEWPSKEKGCLFEFIAYYVARQRAKVSKGMLCRILEYLTLDNHVLANVSSHSSTPKNREKQVLALLEVVPESDWDVPFLLDLCERAKYYQVCGLIHFIRHEYVAALDSYMKDVDEPVHAFSFINKAFSQLIGNDRAAIRSAVLSRIPELVELSREGAFHIVTRHFTDESSHIITKLQSHPRSLFLYLKTLIELHLFGTLDLSNLTKDVFTNPPNGKQDKDLPQGIHDYLENISDFPKYMRENPSHVPDDLIELYLELLCQYERGSVLKFLEMFDSYRVEHCLRLCQEYGIIDAAAFLLERVGDVGSALSLTLSDLNDKFVELDAAVEAVVLNHPKLDSSHMEVFNTVLRTKEVNVMYELLHACIGLCQRNTPRLNPEESEAHWFKLLDSFCDPLMDSYVEEREYERKNYFGVLAGSADSQLDKDTYKSSWKISQSGNGDLERKLLSQFIKEIVEGMIGYVHLPAIMSKLLSDNGSQEFGYFKLTILGMLGTYGFERRILDAAKSLIEDDTFYTMNLLKKGASHGFAPKSSVCCICNSLLIKNSVTTGIRIFNCGHAIHLHCEASEVESSSKGSSSGCPVCMPNQKPQKSRNKSIDTENGLVNRFSSRRQPTHYGSTIHHHDNDLSENIYGGQQQISRFEILSSLQKNQRFMQFENLPPLRLAPPAVYHEKVSKVAHYQTGESSNSSAIIEKNNRHKQNRELRVRGSSIRFPLKSSFFGKEKTNKR 1896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01113 1896 Coils Coil 298 318 - -
Vifa4g01113 1896 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1364 1524 IPR000547 GO:0006886|GO:0016192
Vifa4g01113 1896 SUPERFAMILY RING/U-box 1702 1756 - -
Vifa4g01113 1896 Gene3D - 364 512 IPR015943 GO:0005515
Vifa4g01113 1896 MobiDBLite consensus disorder prediction 1848 1862 - -
Vifa4g01113 1896 PANTHER VACUOLAR PROTEIN SORTING VPS41 302 1826 IPR045111 GO:0006623
Vifa4g01113 1896 Pfam Golgi CORVET complex core vacuolar protein 8 919 1102 IPR025941 -
Vifa4g01113 1896 MobiDBLite consensus disorder prediction 98 134 - -
Vifa4g01113 1896 SMART ring_2 1703 1751 IPR001841 -
Vifa4g01113 1896 MobiDBLite consensus disorder prediction 28 84 - -
Vifa4g01113 1896 MobiDBLite consensus disorder prediction 1739 1767 - -
Vifa4g01113 1896 ProSitePatterns Trp-Asp (WD) repeats signature. 451 465 IPR019775 -
Vifa4g01113 1896 MobiDBLite consensus disorder prediction 272 286 - -
Vifa4g01113 1896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 432 468 - -
Vifa4g01113 1896 MobiDBLite consensus disorder prediction 1109 1132 - -
Vifa4g01113 1896 MobiDBLite consensus disorder prediction 30 57 - -
Vifa4g01113 1896 ProSiteProfiles Trp-Asp (WD) repeats profile. 439 473 IPR001680 GO:0005515
Vifa4g01113 1896 Pfam Region in Clathrin and VPS 1391 1489 IPR000547 GO:0006886|GO:0016192
Vifa4g01113 1896 SUPERFAMILY WD40 repeat-like 422 716 IPR036322 GO:0005515
Vifa4g01113 1896 MobiDBLite consensus disorder prediction 119 134 - -
Vifa4g01113 1896 MobiDBLite consensus disorder prediction 58 72 - -
Vifa4g01113 1896 ProSiteProfiles Zinc finger RING-type profile. 1703 1751 IPR001841 -
Vifa4g01113 1896 MobiDBLite consensus disorder prediction 228 242 - -
Vifa4g01113 1896 MobiDBLite consensus disorder prediction 193 291 - -
Vifa4g01113 1896 SMART WD40_4 423 464 IPR001680 GO:0005515
Vifa4g01113 1896 MobiDBLite consensus disorder prediction 1848 1871 - -
Vifa4g01113 1896 Pfam Anaphase-promoting complex subunit 4 WD40 domain 423 479 IPR024977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01113 Vifa-Chr4 336365113 336376566 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01113 K20178 - gmx:100780869 2613.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01113 4 336365113 336376566 Vifa4g01113 4 336365113 336376566 ECH