Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01111 ATGCTTCATTACCAGTATACAAAAATGGCAACAATGACTTCTTCTAGTAACATAGTATCCAGAAGCTCTCATGTCAATATACCAACTGTTTCATGTGAGTCTAAAATGGGACCAATGAGACTTGGTTCTATAAGGAAAGCCAATACTCATAATGGACTCAGAATTTTGAACTCGTTAGACGAGATACTAAATAGGACCCCGATTAAAATGAAGGGAGTGCAATCGAGGAAGAAGGGTGTTCAGAGAAAGAATGTTAGGCCTAAAGGTATTATAGTTTGTGGCATGAATTTGATCTTTGTTGGAACTGAGGTTGCTCCATGGAGTAAAACTGGTGGTTTAGGTGATGTTCTTGGAGGTCTTCCACCAGCATTAGCAGCTAATGGACACAGAGTTATGACCTTAACTCCACGTTATGACCAATACAAAGATGCATGGGATACAAGTGTAACAATTGAGGTAAAAGTAGGAGATAGAACAGAAAAAGTCCGCTTCTTCCATTGCTTTAAACGAGGAGTTGATCGCGTCTTTGTAGATCATCCTATATTTCTTGAAAAGGTTTGGGGGAAAACTGGAACAAAACTTTATGGTCCTGCTGCAGGAGATGATTACCAAGACAATCAACTACGGTTTAGCATCTTCTGTCAGGCAGCTCTGGAAGCAGCGAGAGTTCTGAATCTTAAGAGCAATAAATATTTCTCAGGACCATATGGTGAAGATGTCATTTTCGTCGCTAATGATTGGCACACTGCCCTTATCTCATGCTACATGAAATCTATGTACCAATCAATTGGCATCTTTAGGAATGCCAAAGTTGTTTTTTGTATCCACAACATTGCTTACCAAGGAAGATTTGCATTCGCCGACTATTCGCTTCTCAATCTCCCTGACCAATTTAAAAGCTCCTTTGACTTCCTCGACGGGCATGTTAAACCAGTTGTTGGAAGAAAAATCAATTGGATGAAAGCTGGAATTATAGAATCTCATCTAGTTTTAACTGTTAGTCCATACTATGCGCAAGAACTAGTGTCAGGCCCAGATAAAGGAGTTGAGTTGGACAACATTCTTCGCCGAGTTGGTGTTACTGGAATCGTAAATGGCATGGATGTTCAAGAGTGGAATCCGTCCACCGACAAATATATAAGTATCAAATATGATGCCTCAACAGTATTGGAAGGAAAAGCTCTTCTGAAAGAAGAACTGCAAGCAGAAGTTGGATTGCCGGTTGACAGAAAAATTCCTCTCATTGCGTTCATCGGTAGGCTTGAAGAGCAAAAAGGTTCTGATATTCTTGTAGAAGCCATTCCCCAATTTATTAAGGAGGATGTTCAAATAGTAGCGCTAGGAACGGGAAAAAAAAGAAATGGAAAAGCAACTTCAGCAACTTGA 1386 0.3997 MLHYQYTKMATMTSSSNIVSRSSHVNIPTVSCESKMGPMRLGSIRKANTHNGLRILNSLDEILNRTPIKMKGVQSRKKGVQRKNVRPKGIIVCGMNLIFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTLTPRYDQYKDAWDTSVTIEVKVGDRTEKVRFFHCFKRGVDRVFVDHPIFLEKVWGKTGTKLYGPAAGDDYQDNQLRFSIFCQAALEAARVLNLKSNKYFSGPYGEDVIFVANDWHTALISCYMKSMYQSIGIFRNAKVVFCIHNIAYQGRFAFADYSLLNLPDQFKSSFDFLDGHVKPVVGRKINWMKAGIIESHLVLTVSPYYAQELVSGPDKGVELDNILRRVGVTGIVNGMDVQEWNPSTDKYISIKYDASTVLEGKALLKEELQAEVGLPVDRKIPLIAFIGRLEEQKGSDILVEAIPQFIKEDVQIVALGTGKKRNGKATSAT 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01111 461 CDD GT5_Glycogen_synthase_DULL1-like 96 457 - -
Vifa4g01111 461 Pfam Starch synthase catalytic domain 97 356 IPR013534 -
Vifa4g01111 461 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 86 451 - -
Vifa4g01111 461 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 87 453 - -
Vifa4g01111 461 Gene3D Glycogen Phosphorylase B; 97 367 - -
Vifa4g01111 461 Gene3D Glycogen Phosphorylase B; 368 455 - -
Vifa4g01111 461 FunFam Starch synthase, chloroplastic/amyloplastic 96 376 - -
Vifa4g01111 461 NCBIfam glycogen/starch synthase, ADP-glucose type 95 453 IPR011835 GO:0004373
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01111 Vifa-Chr4 335830300 335833407 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01111 9 453 Glycosyltransferase AT1G32900 68.680 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01111 K13679 - gmx:100037476 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01111 4 335830300 335833407 Vifa4g01111 4 335830300 335833407 ECH