Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01074 ATGTTTTATTACAAACTCATTGTTCTCTCATTTCTCACTACTCCTATCATTTGTTTCGTAATCCGATGGCTATTATTCAAAACCGGATTAATATACGCCACGAAGAAACTTCATAGAAAACTACAAGATTGTTTCTACGTTTATCAATACCTTAAAGTCCCCGAGTTCAACGAAAACATGCAACGAAACGAGTTATATCGTAAAGTTTCTCTCTATTTACATTCTCTTCCTTCTCTCGAAGATTCTGATTTCACAAACCTCATTTCCGTTAACAACCAAAACGACATCGTTTTATCTCTAGACTCAAATCAAATCATTGAAGACCGTTTTCTCGGTGCTAATCTCTTCTGGTTCAACAATAAAACCGAACCGGGTCATCAAACCGATGTTTTCCTTCTCAAGATCAGAAAAACCGATAAACGAAGAATCCTCAGAAGCTATCTCCAACATATTCACGATGTCTCCGACGAGTTAGCGAAACGCAACTTACGCTTATTCGCTAACATCACCGGAGACAAGGGAACCAAAACGAGATGGAAATCGGTTCCGTTTAATCATCCAGCAACGTTTGACACCATGGCGATGGAAAATGATCTCAAGAACAAAATCAAAACCGATCTCGAATCGTTTCTCAAAGCGAAACCGTATTACAGACGACTCGGCCGTGCCTGGAAACGGAACTTCTTGTTGTACGGTCCTTCCGGTACCGGTAAATCGAGCTTTGTTGCTGCAATGGCGAATTTTCTTTTTTATGATGTATATGATGTGGATCTCTCTCAAGTTCATGGCGATTCGGATTTGAAGTTTCTCTTACTCGGAACAACGCCGAAATCGATCATACTAGTAGAGGATCTCGACAGGTTTTTATCGGAGGAATCGGCGGTTACGGTGGCCGGAATTCAGAATTTCATGGACGGAATCTTGAGTTCGTGTTGCGGGGAGGAGAGGATTCTGGTTTTCACGATGACCAGTAAGGAATGTGTTGACTCGGGTTTTCTCCGACCGGGTCGGGTCGACGTTCATATCCATTTCTCATGGTGTGATTTCTCGTCGTTCAAGACGCTAGCGTGTAATTACCTAGGAGTGAAGGACCACAAGCTGTTTCCGCAGGTGGAGGAGATTTTCCGGCTCGGCGCGAGTTTAAGCGCGGCGGAGATCAGCGAGTTGATGATTGCAAACCGGAACTCGCCGAGTCGGGCTATTAAATCGGTTATCGGGGCGTTACAAATGGACGGTGATGGGAGAGGTGTTGGGGATGTGATCGTACGGCAGATAGAGGGTAATGACGTGGAGGAATCTCAGAAGCAAGGTTCTCGTTGTGGAGGGGATGGATTCTCTACGGTTAAGGACTTGAGGAAAATTTATAGTTTGTTTAGATTAAGGAATGGGAAGAGAAATCGAACTGCTAATTTAGCACTCAATGATGAAGGATGA 1434 0.4372 MFYYKLIVLSFLTTPIICFVIRWLLFKTGLIYATKKLHRKLQDCFYVYQYLKVPEFNENMQRNELYRKVSLYLHSLPSLEDSDFTNLISVNNQNDIVLSLDSNQIIEDRFLGANLFWFNNKTEPGHQTDVFLLKIRKTDKRRILRSYLQHIHDVSDELAKRNLRLFANITGDKGTKTRWKSVPFNHPATFDTMAMENDLKNKIKTDLESFLKAKPYYRRLGRAWKRNFLLYGPSGTGKSSFVAAMANFLFYDVYDVDLSQVHGDSDLKFLLLGTTPKSIILVEDLDRFLSEESAVTVAGIQNFMDGILSSCCGEERILVFTMTSKECVDSGFLRPGRVDVHIHFSWCDFSSFKTLACNYLGVKDHKLFPQVEEIFRLGASLSAAEISELMIANRNSPSRAIKSVIGALQMDGDGRGVGDVIVRQIEGNDVEESQKQGSRCGGDGFSTVKDLRKIYSLFRLRNGKRNRTANLALNDEG 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01074 477 Pfam ATPase family associated with various cellular activities (AAA) 229 344 IPR003959 GO:0005524|GO:0016887
Vifa4g01074 477 PANTHER BCS1 AAA-TYPE ATPASE 36 409 - -
Vifa4g01074 477 Gene3D - 343 405 - -
Vifa4g01074 477 Gene3D - 178 342 IPR027417 -
Vifa4g01074 477 Pfam Domain associated at C-terminal with AAA 32 117 IPR025753 -
Vifa4g01074 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 403 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01074 Vifa-Chr4 309867339 309868772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01074 185 337 Miscellaneous Gene Families AT3G02450 28.402 1.40e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01074 - K08900 gmx:100787809 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01074 4 309867339 309868772 Vifa4g01074 4 309867339 309868772 ECH