Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01050 ATGGCCAACTTAGTCTCCACCTTGTTTATGCTTGGGTTGTGTTTGATGTTTACTATCTCCAATGTGAAACTTATGGCACAAGGAAGTGTAATGGGAGAAACAACTAGGTTCTATGATTTTAAGGTTCAAACTAAAAGAGTTACCAAACTTTGCAACTCCAAAGAAATTGTTACAGTCAATGGTATGTTTCCAGGACCTGTAGTTTATGCACAAGAAGATGATAGAATCATAGTCAAGGTTATCAATAAGACACCTTTCAATGTTACCATTCACTGGCACGGTATCCGGCAAAAGCTATCGTGCTGGTACGATGGACCATCTTATATTACACAATGTCCGATTCAAGCAGGCCAGAGTTTCACCTATAATTTTACAGTGGTGAATCAGAAGGGAACTTTCTTCTGGCATGCTCATGTTTCGTGGCTAAGAGGAACGGTTCATGGAGCTATGATTGTTTATCCAAAGAATAGGGTACCTTTCCCATATAAGAATCCTTATCAAGAGCAAATAATCATACTAGGGGAATATTGGCTGAAGGATCTACAACAAGTTGAGCATGCCACTCTAGTGAGTGGAGGAGCTCCACCTCCAGCTGATGCATATACCATTAACAATCATCCAGGCCCCAACTATAACTGCTCCATTAACGATGTGTACCAACTTAATGTGATTCCGGGAAGGACCTACTTGTTAAGACTGATTAATGCGGGTCTAAACACCGAGAACTTCTTTGCCATTGCTAATCACAAACTAAAGATTGTGGAAGCTGATGGTGAATACACGAAGCCATTCACCACAGACACGGTGATGCTTGGACCGGGCCAAACACTAAATGTCCTAGTCTCAGCTGATCAACCGGTAGGAAAATACTCCATGGCAGTTGCACCTTACAAGTCTGGCAGGATTGTCAAATATCAAAACGTTTCAGCGATTGCCTACTTCAACTATAACGGGGCCGAATCTAACTGTTCATATTTACAGGCTAAATTACCTAAGCTTGATGATAAGTTAGCTGTTAAGACAGTCATGGATGGATTAAGGAGCCTAAATCAAGTGAATGTTTTTAAAGAAATTGATAAAAACATATTCATCACCGTTGGATTGAATGTTCAAAGATGCCACTCGAAGACACCAAAGAAAAACTGTCAAGCCATGAATAATGGTGTACTGACAGCTTCCATGAACAATATAAGTTTCGTTCATCCCCGTATATCAATCCTGGAAGCTTATTATAATAAAGTAAATGGAACATATACTGAAGATTTCCCCGACGCACCCTCTAAGTTCTATGACTTCGTTAATGGTGCCCCAAATAACATTCCATATGACACGGAGTCGTTGAATGGGACTAGAACTAAGGTCCTTGAATACGGAACCAAGGTGCAACTCATTTTGCAAAACACAGGGACGGTCAACATTGAAAACCACCCGATTCACATTCATGGCTACAGCTTTTACGTTGTAGGGTATGGCGCAGGCAACTATAATCCACTGACTGCAAAATTCAATTTAGTGGATCCCCCGTACATGAATACAATCGGTGTTCCAGTGGGGGGATGGGCAGCTGTCCGGTTTGTAGCCGATAATCCAGGTGTGTGGTACATGCACTGTCACATTGACATACACCAATCATGGGGACTTGGAATGGTATTTATAGTGAAGAATGGAAAAGGAGAACTAGAGTCCCTACCACATCCCCCATCAGACCTACCACTATGTTAA 1722 0.4152 MANLVSTLFMLGLCLMFTISNVKLMAQGSVMGETTRFYDFKVQTKRVTKLCNSKEIVTVNGMFPGPVVYAQEDDRIIVKVINKTPFNVTIHWHGIRQKLSCWYDGPSYITQCPIQAGQSFTYNFTVVNQKGTFFWHAHVSWLRGTVHGAMIVYPKNRVPFPYKNPYQEQIIILGEYWLKDLQQVEHATLVSGGAPPPADAYTINNHPGPNYNCSINDVYQLNVIPGRTYLLRLINAGLNTENFFAIANHKLKIVEADGEYTKPFTTDTVMLGPGQTLNVLVSADQPVGKYSMAVAPYKSGRIVKYQNVSAIAYFNYNGAESNCSYLQAKLPKLDDKLAVKTVMDGLRSLNQVNVFKEIDKNIFITVGLNVQRCHSKTPKKNCQAMNNGVLTASMNNISFVHPRISILEAYYNKVNGTYTEDFPDAPSKFYDFVNGAPNNIPYDTESLNGTRTKVLEYGTKVQLILQNTGTVNIENHPIHIHGYSFYVVGYGAGNYNPLTAKFNLVDPPYMNTIGVPVGGWAAVRFVADNPGVWYMHCHIDIHQSWGLGMVFIVKNGKGELESLPHPPSDLPLC 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01050 573 CDD CuRO_3_LCC_plant 418 556 IPR034289 GO:0005507
Vifa4g01050 573 Pfam Multicopper oxidase 444 556 IPR011706 GO:0005507|GO:0016491
Vifa4g01050 573 NCBIfam laccase 35 573 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vifa4g01050 573 ProSitePatterns Multicopper oxidases signature 2. 536 547 IPR002355 GO:0005507
Vifa4g01050 573 Gene3D - 160 334 IPR008972 -
Vifa4g01050 573 Pfam Multicopper oxidase 169 319 IPR001117 -
Vifa4g01050 573 Gene3D - 371 573 IPR008972 -
Vifa4g01050 573 CDD CuRO_2_LCC_plant 169 316 IPR034285 -
Vifa4g01050 573 SUPERFAMILY Cupredoxins 356 573 IPR008972 -
Vifa4g01050 573 CDD CuRO_1_LCC_plant 38 154 IPR034288 GO:0005507
Vifa4g01050 573 Gene3D - 20 154 IPR008972 -
Vifa4g01050 573 Pfam Multicopper oxidase 42 156 IPR011707 GO:0005507
Vifa4g01050 573 SUPERFAMILY Cupredoxins 31 177 IPR008972 -
Vifa4g01050 573 SUPERFAMILY Cupredoxins 164 321 IPR008972 -
Vifa4g01050 573 PANTHER MULTI-COPPER OXIDASE 38 558 IPR045087 -
Vifa4g01050 573 ProSitePatterns Multicopper oxidases signature 1. 531 551 IPR033138 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01050 Vifa-Chr4 306197997 306200256 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01050 K05909 - gmx:100789406 1003.82