Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01048 ATGACAGGGTTAACAGTGAAAACCCCACCTCACATGCAATCATTTGGAATTTTCCTCCGTGAACCACCGCAAAATGAGGTCACCAACGGCGAAGACCACCGGAACCCATCACCGGCGACGAAGAAAACAATAAAAAAGACACTGATCATGGATGAATCATCCCTAGAAAACCCTGATTTGGGTCCATTTCTTCTGAAGATGGCACGAGATACCATAGCTGCTGGTGAGAATCCAGGTAAGGCTTTGGATTATGCAATTCGGGCATCAAAATCCTTTGAACGGTTTTCGGGTCCGGGTTTGGATCTTGCCACGTGTCTGCATGTTGTTGCTGCGATTTATTGTAGTTTGGGGAAGTTGGATGAGGCTATTGAGGAATTGGAACGGTCAATTTTGTTGTTGGATGTTGAAAATGGGTCGGGTCATGGTATGGTGAAATTTTCTGGGTATATGCAACTTGGTGATACTTATTCTATGACTGGAAGGTTGGATAGATCCATTTTGTGTTATGAATCGGGTTTGAAGATCCAAATGGGTATTTTGGGTAAGTCTGACCCGAGAGTTGCAGAAACTTGCAGATACTTAGCTGAAGCTCATGTTCAAGCCATGCAATTCGACGACGCAGAGCACTTCTGCAAGAAGACACTTGAAATTCATAAGGAGCATTGCTCACCCGCTTCCCTCACCGAAGCAGCTGACAGGCGTCTCATGGCCCTTATCTGTGAAGCAAAGGGAGATTACGAACCAGCACTCGAGCATCTTGTCCTAGCCAGCATGTCAATGATTGCTAACAGACAAGATGACGAGGTTGCAGCTATTGATGTTAGTATCGGTGATATTTACTCGTCGCTGTGTCGTTTTGACGAAGCCGTTTTCTCCTATCAGAAAGCACTTACAGTGTTCAAATCCACCAAGGGTGAAAACCACAGTTCTGTTGCTTTAGTGTTCATTCGTCTCGCGGATCTTTACTTCAAGACCGGAAAATTAAGAGAGTCAATGTCTTATTGTGAAAACGCATTGAGAATATATAGCAAGCCCTTACCTGGAATAACCGCCGGAGAGATTGCGAGTGGCTTGACCGAAATCTCGGCAATCTACGAAGCTCTGAACGAGCCCGAGGACGCGTTGAAGCTCTTGCAGAAGGCGGTGAAACTGTTGGAGGGTATCCCTGGACAATATAGGACAGTGGCAGGAATAGAAGCTCAAATGGGAGTGCTGTTCTACATGGTCGGACAGCATGTGGATGCTTGGAAATCTTTTGATAATGCTGTCGTCAAGCTGAGAGCCGGCGGGGAGAGGAAATCAGCATTTTTCGGATTTGTGTTGAATCAGATGGGCTTGGTTTGTGTTCAGCTCTATAAAATAGAAGAGGCTGCTGCACATTTTGAAGAAGCTAGAGAGATATTGGAGAGGGAATGTGGAAACTATCATTTGGACACTCTTGGAGTGTATAGCAACCTCGCCGCAACTTATGATGCATTAGGAAGAGTTGAAGATGCGATTCGGATATTGGAATACATACTGAAAATGCGAGAAGAAAAACTTGGAACTGCAAATCCAGATGTTGATGAAGAAAAGAAAAGATTGTTTGAGCTTTTGAAAGAAGCGGGAAGAGTTCGATGTAGAAAGGGAAAATCTCTTGAAAAGCTTATTGATTCAAACTCGTTGAAGATGAAGAAGGAAGGAAGAAGGAGATGGGGTGCATTTAGTTTTAGAACTTAG 1719 0.4433 MTGLTVKTPPHMQSFGIFLREPPQNEVTNGEDHRNPSPATKKTIKKTLIMDESSLENPDLGPFLLKMARDTIAAGENPGKALDYAIRASKSFERFSGPGLDLATCLHVVAAIYCSLGKLDEAIEELERSILLLDVENGSGHGMVKFSGYMQLGDTYSMTGRLDRSILCYESGLKIQMGILGKSDPRVAETCRYLAEAHVQAMQFDDAEHFCKKTLEIHKEHCSPASLTEAADRRLMALICEAKGDYEPALEHLVLASMSMIANRQDDEVAAIDVSIGDIYSSLCRFDEAVFSYQKALTVFKSTKGENHSSVALVFIRLADLYFKTGKLRESMSYCENALRIYSKPLPGITAGEIASGLTEISAIYEALNEPEDALKLLQKAVKLLEGIPGQYRTVAGIEAQMGVLFYMVGQHVDAWKSFDNAVVKLRAGGERKSAFFGFVLNQMGLVCVQLYKIEEAAAHFEEAREILERECGNYHLDTLGVYSNLAATYDALGRVEDAIRILEYILKMREEKLGTANPDVDEEKKRLFELLKEAGRVRCRKGKSLEKLIDSNSLKMKKEGRRRWGAFSFRT 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01048 572 Coils Coil 451 471 - -
Vifa4g01048 572 SMART tpr_5 146 179 IPR019734 GO:0005515
Vifa4g01048 572 SMART tpr_5 438 471 IPR019734 GO:0005515
Vifa4g01048 572 SMART tpr_5 188 221 IPR019734 GO:0005515
Vifa4g01048 572 SMART tpr_5 355 388 IPR019734 GO:0005515
Vifa4g01048 572 SMART tpr_5 480 513 IPR019734 GO:0005515
Vifa4g01048 572 SMART tpr_5 270 303 IPR019734 GO:0005515
Vifa4g01048 572 SMART tpr_5 103 136 IPR019734 GO:0005515
Vifa4g01048 572 SMART tpr_5 312 345 IPR019734 GO:0005515
Vifa4g01048 572 MobiDBLite consensus disorder prediction 21 42 - -
Vifa4g01048 572 Pfam MalT-like TPR region 108 258 IPR041617 -
Vifa4g01048 572 Gene3D Tetratricopeptide repeat domain 437 539 IPR011990 GO:0005515
Vifa4g01048 572 Coils Coil 116 136 - -
Vifa4g01048 572 Gene3D Tetratricopeptide repeat domain 256 434 IPR011990 GO:0005515
Vifa4g01048 572 Gene3D Tetratricopeptide repeat domain 42 255 IPR011990 GO:0005515
Vifa4g01048 572 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 31 554 - -
Vifa4g01048 572 Pfam Tetratricopeptide repeat 269 343 - -
Vifa4g01048 572 Pfam Tetratricopeptide repeat 441 512 - -
Vifa4g01048 572 SUPERFAMILY TPR-like 104 517 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01048 Vifa-Chr4 305566648 305568687 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01048 - - cam:101489796 1006.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01048 4 305566648 305568687 Vifa4g01048 4 305566648 305568687 ECH