Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01047 ATGAGAACCGAAAGAACAACCTCATCATCTTCTCAAAACACGAAAACCATCATCGATCACCACCTCCCCCTCCGTCTCCTCAGATCCGAAATAGTCCCACCCGCCCCCACTTTCTCTCACTCCACCATCGATTTCCTCCACCACTTTGCAGGCTATTCATGGATCGCTTATGGAGCTTCTTCTATTCTCACTATCACCCATTTCCCTTCTCCTCTTTCCACTCATCAGACCCGCATCGGTCCCCTTTTTCGCCTATTCTTTGAACTCTCTTCCGATCACTCCTCCCCTGTTTCTGCTGTCTCTTGGTCACCTCAATTGCCTTCCTCCGGTGAACTTGCTGCTGCCGCTCTAAATTGCATCTGGGTTTTTCATCATCACTCTGTTGCGTCCAAAGGTTCTTTTTGTTGGAGCCAGAATGCAGTGCTTGTACAAAGTACAAAAGTGGAGACCATAAGATGGACGGGATCAGGAGATGGAATTATTTCTGGTGGAATGGAGGTAGTTTTCTGGAAAAAGATTAATAGATGTTGGGAAATCGCGTGGAAGTTTAAAGCAGACCTGCCCCAAACACTCGTAAGTGCAACCTGGTCTATTGAAGGTCCTTCGGCAACTGCACCGTCTTCTAGTAAAGAACATATTGAAGGGTCCTTAATCAGTCAGGAAAGCAAATTTGTATTCGTATGTCAGAGCAATGGACTATCTGAATATTCAAAAGCCAAACTTCAGCATCCTCTACCTATTGTGTCAATTCAATGGAGACCATCGAGGGGAAGACTATCAGACAAATACAGTAAGTATTCAAAAAGGAATGTGTTACTTACTTGCTGCTTAGACGGAACTGCAAGGTTATGGAGTGAGATTGATAATGGAAAGGCCAAGAGGGCTGGGAAGAACACAGGGTGCTCTTTTTGCGTTCTTGCTGTCATTGAGATTAATCAGTGTTTAAATGGAATTCTTGGTTCAGATATATTTGTGACGTGGGGGATGGAAATCGAGGGGTTATTTACCAGAGGTGAAGGAGACAAACAAAATTTCTCCAAAGAAGGAATCGAGCACGACATCAGAAAATGTGACTGGTTAGTTGGATATGGTCCTGGAATGTTGCTTAGCTTTTGGGCTGTCCACTGTCTTGATGATGTTTCCCCACTGAGATTCCCCCGAGTTACATTATGGAGGAAACATGAGCTCCAGAGCCACGACATCGGAAACATTTTTAAGTTTGACTCATCTGATTTTAAAAACGCATTACTTCTGCATAAAGTCATTATATCAAGAAACTCTTTGTCTGGTCCACCAAGCATATGCTCTCCACTACAGCTTTTACCTTGTAATTCCTTAGTTTGGTCATTTTTCCATATTCAAGAAATACGTGATGCTGTTGAGAACTCCCCTGACAATGCTAAAACAGATGAAATCTCCTCTCATTTGACTGGTGGGTCTTTAAACTTAGATGGACATACTGGGAAAATATTAAAGGTTTCAATTCATCCTTATATTTGCAAAGCTCAAGTTGCTGCTTCTCTTGATTCTAATGGACTGCTTCTTTTCTGGTCACTTTCTAATATTTCAAACGGCATTCTGGGATGTCCAACGTTGGTTCCTACTTGGGAACTCTGTGGAAAACTTGCAACTCAACACTCATGCTCCATGTATACAAGCTTGACATGGGCACCTTCAATACTTGATGAGCAACTTGTTTTTTTCATGGGACATACCAGGGGGGTTGATTGCTTCATAGTCAATATTAGTCGAACTGAAGAAGATAACTTAGAATGTCACTACTTATGCACTATTCCCTTCACTGGTCATGGTCCTTATGAGGATGGCCCGCACGATATATTTGCAATTCCTTTGAACTCTACTTCTAATAAAACAATTTGTAACAATAAACTTATGCTATTGGCAATTTGGACAGGGAGATTTCAGGCCCTATCATGGGAAGTTAACGTGCAATCTTTTGACACGTCAACAGTCGGTTGTGAATGCAATTTTGATGCTAAAAGCCTTGATGACAACCATATTTGGGCATTTGAAAGTACATTTGCTAATAAAAAATATTGCATTGCTGTAATTCCATGTTCATCCGAGTTTCCAAGTTCCGATGATCTGGTTACTAGTTTTGCAGTGGGAGATCCAGGCACCCTGAGTCATAGACAGCAAGAGTTTGGCTTTGCAAATGATCATTGTAGTAGCAGTCCTACATATATCTTGGCCACTGGCTGCTCTGATGGTAGCTTGAAACTTTGGAAAAGTAACCGTGGCAATCTGTCGACCCTGAACTTGCCATGGGAGCTTGTGGGTATGTTTATTGCACATAACAGTCCTGTCAAGGGTATATGTTTCACTGATTGTGGTCAGAAAGTTGCAACGTTCTGTAACATAAATGATTCCAATGCTGTCAGTACCATCCATGTATGGGATGCTATAAATCTGATCATTGCAGGGACTTTTATTTTAGAAGATACACTAACGCTTGAAAGTGATGTTATTACTCTCAAGTGGTTGACTTTAGGGACTGGTGAGTTATTGCTCGGAGTTTGTTTGCAAAATGAGTTGCAAGTATATGCTCGGAAGCGTTATGACAGTTTGGCTTGGTCGAACTCTAGCTGCTGCAGTGATCCAAGAGCCTATAACAGCAAGGATGAAGCATATGAAGACATAAGTTCTGCAGTTTTTACTGATTGTGACGTTGGTGCTTTCGAAGAGCTTTCAATTGGAGACAATAACCTATACAGTAGCATGTTTCTGGCTAAGGAACAATTAAAATATGAACTCCTTAACAAGGTTGGTTTGTGGAGCATCTTAGAAGTAGCTGAGCTGATTAGTGGATCGTTGCCTACTTATCACCCTGATGTACTTCTTACCAATATAAGTTCAGGCAACTGGAAACGTGCTTACATAGCTGTCAAGCATTTTGTTGAACACCTGATTTCTAATTATGATCCTAAAAAGAGACAGATTACCAAAAGGAGCGGTCTTCCGAGTATCATATTGTCAGATTATCTAGAAGGCCGTATGTCAAAAAGTTCCCAAGATAAGGGATTTAATTGGAGTGAGGATGTTACCTCATTCGCTTCATTTTCACATGCTCAAAATAGCTCAATCCAGTTTTCATATCATTCGGATTCCAGTGCTGAAAATAAAAGCAGTTCCACCTCAACTAGATCCGAGCTTAATGGCTTTATTGAAACTTTAAAGAATTTTCCCGATTTACCTCATTTGATCAACATAGAGAGGACAGAGATTCTCTCAATCATTGATTTGCTCAGTGAAGTTTGTAATCCAGACTCATCTTCTGCATATCAGAGTCTTGATGAACCTGGACGAAGGTTTTGGGTTGCACTAAGGTTTCAGCAATTACTTTTTCAACGAAAGTTTGCCAGAGCTGCATCTGTCGGAGAGATGATCATTAACTCAAGGATGTTCGTATGGGCTTACCACTCTGATTGTGTAGAAAATTTATTTGGTTCTGTCATACCCAATGAACCATCGTGGCAAGAAATGCGTGCTTTGGGTATGGGCTTTTGGTATTCCAGCATACCTCAATTGCGTGCTAGGATGGAGAAATTAGCAAGAGCACAGTATTTGAAGAACAAAAATCCTAAGGATTGTGCATTGCTGTATATTGCATTGAACAGAATTCAAGTTTTAGCTGGCCTTTTTAAAATCAGTAGGGATGAGAAGGACAAACCTTTAGTGGGTTTTCTCTTGCGCAATTTTCAGGATGAGAAAAATAAAGCTGCTGCTTTAAAAAATGCTTATGTCTTATTAGGAAAGCATCAGCTTGAATTGGCGGTTGCCTTCTTTTTGCTTGGAGGCGATCATTCTTCTGCTGTAAATGTTTGTGCCAAGACCCTTGGGGACGAACAACTTGCACTAGTAATTTGTCGCCTTGTTGAGGGCCATGGTGGACCATTAGAGCATCACCTAATTACTAAGTATATATTTCCGTCTGCAACTGATAGAGGAGACTACTGGCTGGCTAGCCTTCTGGAGTGGGAAATGGGTAATTACTATCAATCTTTTCATAGAATGCTACAGTTTTCCGAAAAGATTCGGGATCCAGAGTCAATCATTATGTCCAATTCTGGTTCTTTTTTGGACCCTACTGTTGGTTTTTATTGTCAAATGCTTGCAACAAAGAATAGCACACGGAACGCTGTAGGAGAGCAAAATTCAACCATCCTTTTAAGATGGGCAACTTTGATGACAGTTACTGCCCTAAAAAGATGCGGTATACCACTTGAGGCATTGGAGTATTTTTCATCTTCTCCGAGCATGCTTGGGACTGCTGATCAAGCAAATGAGTTGGATGATGTTCTGTCCAGTACATTAAAGCCTTTGCCAAGAAAATCCTCTAACTGGTTATCTGCTGATGTATCTGTGCATCTGGAGTTCCATGTTAAATTGAATTTGGCACTTTGCTACTTATCAAAACTGATAAGAGAGCATCCAAGTTGGCCCGACACTTTTACAGAATCTGATGGAGAAGGCTCTTACTCTGAAGAGTACATGATTCAATACGAGAAATCAAATGATAGTTTTAAACAAAAGCTATATGCCGGGTTTGATCTTTTGGAACAAAGGTTTTTGCTGACTCCGTGCTATCTAATCAGCATGATCTTACTCTTACTTTGCCATCATGGACTATGGTACATTGGGTATGATGTGACAGACGGAAGCACTCAAGGAGAACTGTCTCAAAAAAAGAGTGATAGATTTGATGTTTCCATTTTATCTCATTCTCAATTCAAACCCCTCTTTAAAACTGCAGAAGAAATCTCCTTTCTGTATTCAAGATTTTTTTCTGCCTGTGGTATGGAATATTCTCAACAAAGTTCAACTTTTATGAAAGGTGCATCGGCTGATATTAGAACTAAATTTTTGGATGCCACACAGTGTCACTTTGAAGGTCTTCTGATTTCATTGTCGTATTTAAGAGCTGTTTTGAGGAGTCAATTGAGGTCTATTAGCAAAGATCTTGTCAAAAAGCATCTTGAAATCCTTGATTTAATTGAATATTATTTATATTTTTCATTAGCTTGGCTTCGTAGAAAATCAGAAGCCCTTCTATTCATGATGCAACCTTTCTTGATTGCACATGATGGCAGTAATCCTTATGAGGTTGATATGGTGAATCTGAAGAACCTTATCCCAAAAGTTGCGCAGTTGTTGTCTCAGAATTCTTTCATAACTAATACAGAAAACCTTCAAGTATCCAAATGCACAGAGAATAATAAACTAGAGGCAGATATGAAGAGTTTGGTTCCGGATGATGAAAGATGGAAGATTTTAGGGACCTGCTTGTGGCAGCATATGTCGAGATTCATGATATCTAATATGAATTTAGTTCTTGCTAAACTTGAAGATGAAAGTTTATCGAGTTCTTTCCATAGTTATAGGGAATCTAATACTCCCAGAAATGTGGATTCTGATAGCATCAGCTTACCAGAGCAGATTCTATTAGTCACATTTAGCTTATGTGATTTACTGACGACAACAGTTACTCATATTTCTTCTTATCATGTTAAAGAACTTGCGGAATTTTTGTGGCAAAAAGTGCAGAATGATTCAGATGTTATGACTCTTGAATGGTTAAGACAAACAAGTCAATCAGAACCCAATCAACATGAAAACCTGGATGTTTCGGAATTGGTTAACAGGAAAGATAACTATCTAGCTCATAAGTTATTATGGGATCATTGTGCCGATCCCAAATTGATACGCGACTGCTTTGCACAGGAGAAACTCAATTGGTCAAAGGATTCGGACCATAAGCCTATCAAAGAATGGAATGACTTGTATACAATTATGACAGGATTGCATAAAACTGATGGTTCACATAATGATGAAAGCAAAGTTGGCAAATCATCTACTAATCATGAAGTAGAATCTCCCGTTAAAAGAATGTTTCCAAGCAGCCATACTTCTGCTAGTTCCGACCAGAAAGAAACAATTCGTGCAAATGTTGAAGACTTTCAAAGTCCCAGAGAAATTTACAAGAGAAATGGAGAACTTTTGGAGGCACTGTGTATAAACTCTACCAATCAACAGGAAGCTGCAGTTGCTAGCAATCGTAAGGGTATAGTATTCTTTCACATGAAAGATGAGACTCCTTTTAGTGGCGAAGCAGACCTTTTGTGGACCAAGGCCGATTGGCCACAAAACGGATGGGCTGGTTCCGAATCCACCCCTGCTCCTACTTGTGTTTCTCCGGGTATTGGCCTTGGAAGCAAGAAAGGGGCACACCTCGGTCTTGGTGGAGCAACTGTCGGTATGGATTCTTCAGCTTGGCCCAGCAGAGACTTGACAGGCGGTGGATCATTAGGAATGCTAGGTTATGCTGGTATTGGCGCCTCTGGATTAGGTTGGGAAACTCAACAAGACTTTGAAGATTTTGTTGATCCACCTGCCACTTTGGAGAATACAAGTACCCGGGCGTTTTCTAGTCATCCAATGAGGCCTTTCTTCTTAGTTGGTTCAAGCAATACACACATTTACTTGTGGGAGTTCAATAAGGACAAAGCTACTGCTACATATGGGGTGCTACCTGCTGCTAATGTCCCTCCACCTTATGCTCTTGCGTCAATTTCAGCTTTACAATTTGACCACTTTGGGCATCGTTTTGCCAGTGCTGCATTAGATGGAACTGTCTGCACATGGCAGCTAGAGGTAGGAGGAAGGAGCAACGTTCGTCCAACAGAATCATCCCTCTGCTTTAATGGCCAAGCATCCGACGTCACGTACATTTCCTCTAGTGGATCAATAATAGCCGTGGCAGGATATAGCTCTACTGCTGTCAATGTGGTTATATGGGATACTTTAGCTCCACCTTCAACTTCTCGAGCTTCCATTTTATGTCATGAAGGTGGTGCGCGCTCCCTTTCTGTATTTGACAATCAACTAGGAAGTGGTTCGGTTTCCCCTCTTATTGTGACTGGTGGTAAAAGCGGTGATATTGGACTTCACGACTTCCGCTATATAGCTACCGGAAAGGCTAAAAGAACTAAACGTTCTGATAGCATTGGGCGAAACTCTCTCACGTCTTTGAATTATGACAAGGACCATAATGTAGATGGGATGCTTTGGTATATTCCAAAGGCACACTCAGGGAGTGTCTCAAAAATAGCTACCATCCCAAATACGAGCTTGTTTTTGACCGGAAGCGCTGATGGAGACGTCAAGCTCTGGGATGCCCAGAGCACAAAGTTAATACATCACTGGCCTAAGATACATGAAAAACACACTTTTCTCCAGTCAGGCTCTCGTGGATTTGGTGGCGTTGTTCGGGCTGCTGTTACAGACATTCAAGTTGTTCCGCATGGGTTTCTAACATGTGGTGGGGATGGAAATGTAAAGCTTGTACAGTTGAAAAGTCATCTGCGTGGTTTCGGAGATGAGTAA 7404 0.4105 MRTERTTSSSSQNTKTIIDHHLPLRLLRSEIVPPAPTFSHSTIDFLHHFAGYSWIAYGASSILTITHFPSPLSTHQTRIGPLFRLFFELSSDHSSPVSAVSWSPQLPSSGELAAAALNCIWVFHHHSVASKGSFCWSQNAVLVQSTKVETIRWTGSGDGIISGGMEVVFWKKINRCWEIAWKFKADLPQTLVSATWSIEGPSATAPSSSKEHIEGSLISQESKFVFVCQSNGLSEYSKAKLQHPLPIVSIQWRPSRGRLSDKYSKYSKRNVLLTCCLDGTARLWSEIDNGKAKRAGKNTGCSFCVLAVIEINQCLNGILGSDIFVTWGMEIEGLFTRGEGDKQNFSKEGIEHDIRKCDWLVGYGPGMLLSFWAVHCLDDVSPLRFPRVTLWRKHELQSHDIGNIFKFDSSDFKNALLLHKVIISRNSLSGPPSICSPLQLLPCNSLVWSFFHIQEIRDAVENSPDNAKTDEISSHLTGGSLNLDGHTGKILKVSIHPYICKAQVAASLDSNGLLLFWSLSNISNGILGCPTLVPTWELCGKLATQHSCSMYTSLTWAPSILDEQLVFFMGHTRGVDCFIVNISRTEEDNLECHYLCTIPFTGHGPYEDGPHDIFAIPLNSTSNKTICNNKLMLLAIWTGRFQALSWEVNVQSFDTSTVGCECNFDAKSLDDNHIWAFESTFANKKYCIAVIPCSSEFPSSDDLVTSFAVGDPGTLSHRQQEFGFANDHCSSSPTYILATGCSDGSLKLWKSNRGNLSTLNLPWELVGMFIAHNSPVKGICFTDCGQKVATFCNINDSNAVSTIHVWDAINLIIAGTFILEDTLTLESDVITLKWLTLGTGELLLGVCLQNELQVYARKRYDSLAWSNSSCCSDPRAYNSKDEAYEDISSAVFTDCDVGAFEELSIGDNNLYSSMFLAKEQLKYELLNKVGLWSILEVAELISGSLPTYHPDVLLTNISSGNWKRAYIAVKHFVEHLISNYDPKKRQITKRSGLPSIILSDYLEGRMSKSSQDKGFNWSEDVTSFASFSHAQNSSIQFSYHSDSSAENKSSSTSTRSELNGFIETLKNFPDLPHLINIERTEILSIIDLLSEVCNPDSSSAYQSLDEPGRRFWVALRFQQLLFQRKFARAASVGEMIINSRMFVWAYHSDCVENLFGSVIPNEPSWQEMRALGMGFWYSSIPQLRARMEKLARAQYLKNKNPKDCALLYIALNRIQVLAGLFKISRDEKDKPLVGFLLRNFQDEKNKAAALKNAYVLLGKHQLELAVAFFLLGGDHSSAVNVCAKTLGDEQLALVICRLVEGHGGPLEHHLITKYIFPSATDRGDYWLASLLEWEMGNYYQSFHRMLQFSEKIRDPESIIMSNSGSFLDPTVGFYCQMLATKNSTRNAVGEQNSTILLRWATLMTVTALKRCGIPLEALEYFSSSPSMLGTADQANELDDVLSSTLKPLPRKSSNWLSADVSVHLEFHVKLNLALCYLSKLIREHPSWPDTFTESDGEGSYSEEYMIQYEKSNDSFKQKLYAGFDLLEQRFLLTPCYLISMILLLLCHHGLWYIGYDVTDGSTQGELSQKKSDRFDVSILSHSQFKPLFKTAEEISFLYSRFFSACGMEYSQQSSTFMKGASADIRTKFLDATQCHFEGLLISLSYLRAVLRSQLRSISKDLVKKHLEILDLIEYYLYFSLAWLRRKSEALLFMMQPFLIAHDGSNPYEVDMVNLKNLIPKVAQLLSQNSFITNTENLQVSKCTENNKLEADMKSLVPDDERWKILGTCLWQHMSRFMISNMNLVLAKLEDESLSSSFHSYRESNTPRNVDSDSISLPEQILLVTFSLCDLLTTTVTHISSYHVKELAEFLWQKVQNDSDVMTLEWLRQTSQSEPNQHENLDVSELVNRKDNYLAHKLLWDHCADPKLIRDCFAQEKLNWSKDSDHKPIKEWNDLYTIMTGLHKTDGSHNDESKVGKSSTNHEVESPVKRMFPSSHTSASSDQKETIRANVEDFQSPREIYKRNGELLEALCINSTNQQEAAVASNRKGIVFFHMKDETPFSGEADLLWTKADWPQNGWAGSESTPAPTCVSPGIGLGSKKGAHLGLGGATVGMDSSAWPSRDLTGGGSLGMLGYAGIGASGLGWETQQDFEDFVDPPATLENTSTRAFSSHPMRPFFLVGSSNTHIYLWEFNKDKATATYGVLPAANVPPPYALASISALQFDHFGHRFASAALDGTVCTWQLEVGGRSNVRPTESSLCFNGQASDVTYISSSGSIIAVAGYSSTAVNVVIWDTLAPPSTSRASILCHEGGARSLSVFDNQLGSGSVSPLIVTGGKSGDIGLHDFRYIATGKAKRTKRSDSIGRNSLTSLNYDKDHNVDGMLWYIPKAHSGSVSKIATIPNTSLFLTGSADGDVKLWDAQSTKLIHHWPKIHEKHTFLQSGSRGFGGVVRAAVTDIQVVPHGFLTCGGDGNVKLVQLKSHLRGFGDE 2467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01047 2467 Pfam WD domain, G-beta repeat 2366 2398 IPR001680 GO:0005515
Vifa4g01047 2467 Gene3D - 678 871 IPR015943 GO:0005515
Vifa4g01047 2467 Gene3D - 2134 2358 IPR015943 GO:0005515
Vifa4g01047 2467 SUPERFAMILY WD40 repeat-like 2146 2454 IPR036322 GO:0005515
Vifa4g01047 2467 Gene3D - 2361 2462 IPR015943 GO:0005515
Vifa4g01047 2467 Pfam RAVE protein 1 C terminal 800 1380 IPR022033 -
Vifa4g01047 2467 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 2366 2401 - -
Vifa4g01047 2467 Gene3D - 58 581 IPR015943 GO:0005515
Vifa4g01047 2467 SMART WD40_4 2187 2222 IPR001680 GO:0005515
Vifa4g01047 2467 SMART WD40_4 2410 2456 IPR001680 GO:0005515
Vifa4g01047 2467 SMART WD40_4 2359 2398 IPR001680 GO:0005515
Vifa4g01047 2467 SMART WD40_4 2278 2324 IPR001680 GO:0005515
Vifa4g01047 2467 SMART WD40_4 2233 2273 IPR001680 GO:0005515
Vifa4g01047 2467 SMART WD40_4 476 518 IPR001680 GO:0005515
Vifa4g01047 2467 SMART WD40_4 762 807 IPR001680 GO:0005515
Vifa4g01047 2467 SMART WD40_4 690 750 IPR001680 GO:0005515
Vifa4g01047 2467 SMART WD40_4 2133 2170 IPR001680 GO:0005515
Vifa4g01047 2467 SMART WD40_4 234 285 IPR001680 GO:0005515
Vifa4g01047 2467 SMART WD40_4 82 124 IPR001680 GO:0005515
Vifa4g01047 2467 MobiDBLite consensus disorder prediction 1970 1984 - -
Vifa4g01047 2467 PANTHER RABCONNECTIN-RELATED 28 2457 - -
Vifa4g01047 2467 MobiDBLite consensus disorder prediction 1945 1985 - -
Vifa4g01047 2467 FunFam Transducin family protein / WD-40 repeat family protein 2139 2416 - -
Vifa4g01047 2467 SUPERFAMILY WD40 repeat-like 91 810 IPR036322 GO:0005515
Vifa4g01047 2467 ProSiteProfiles Trp-Asp (WD) repeats profile. 2366 2407 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01047 K24155 - gmx:100795225 3367.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01047 4 305394194 305406245 Vifa4g01047 4 305394194 305406245 ECH