Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01033 ATGGCACCGAGATACAGTCGCGGAAAGGCCAAGGGAGAGAAGAAGAAGAAGGAAGAAAAGATTCTTCCTGTTGTCATGGATATCACAGTGAACCTTCCGGATGAAACTAGTGTTGTTCTGAAGCAGGGTATATCAACTGATAGAATAATAGATGTTCGTCGGCTTTTATCGGTGAATACGGAGACATGTTACATTACCAACTTTTCTCTATCGCATGAGATAAGAGGGACACGTTTGAAGGATACGGTGGACGTGTCCGCACTGAAACCATGCCTCCTCACTTTAGTCGAAGAGGATTACGATGGGGAAGGTGCGGTGGCTCACGTGCGGAGACTACTGGACATCGTGGCCTGCACCACCAGCTTCGGTCCGTCGTCTCCGCCGAAGAATGGTGCGAGGTCGAGCAAATCTCAATCGCCGCCTCCGGCGAAGCAATCACCGAAAGACGCTGCGGTGACGGACGGAGATGGAGAGATAAGCCACTCGTGCCCTAAGCTGGATAGTTTTTACGAGTTTTTCTCTCTCTCAAACCTCACTGCGCCTCTTCAATATGTGAAGAAAGCTTCGAGGCGATACGTGGAGGAGATATCGGAGGAGGATCATCTCTTCTCGCTCGATGTGAAGGTGTGTAACGGGAAAGTGGTGCACGTTGAGGCTTGCAGAAAGGGGTTTTACAGTGTTGGGAAGCAGAGGATTCTGTGTCATAATCTCGTTGATTTGTTGAGACAGATTAGCAGAGCTTTTGACAATGCTTATGATGATCTCTTGAAGGCATTTTTAGAACGTAACAAGTTTGGAAATCTTCCCTATGGCTTCAGATCCAACACATGGCTTGTTCCTCCTATTGCAGCACAATCACCATCATTTTTTCCTCCTCTTCCCGTGGAGGATGAAAATTGGGGAGGAAATGGTGGTGGTCTTGGAAGAGATGGAGAGTATGATTTGATTCCTTGGGCCAATAAGTTTTCTTTTGTTGCATCTATGCCCTGCAAGACTGCCGAAGAAAGACAAGTTCGTGATCGAAAAGCATTTCTTCTGCACAGTCTGTTTGTTGATGTTGCCATTTTCAGAGCAATTAGAGCTGTTAAACATGTTTTGGAAGATCCCAGTCTTAGCTGCTCAGCAGCAGAAAATGATATTTACAGTGAGAAAGCCGGTGACTTGAGCATTAGAGTCTTGAAAGATGGTTCTGTTGCAAGCTGTAAGATTGATTCCAAAATTGATGGAGTTGAAGCTACAGGAGTAAATCAAAAGGATCTAGTCGAACGGAATTTACTGAAAGGGATCACTGCAGATGAAAATACTGCCGCCCATGATATTACCACTCTAGGTGTTGTTTACGTAAGATATTGTGGTTATGTGGTTGTTGTGAAAGTCGAAGGTGAAGCTAATGAAAAAGTCAATTCTTCATCTCATCAAAATAATGAATTGTTTGATCAGCCAGAGGGTGGTGCCAACGCACTAAATATTAACAGCTTAAGATTTCTTCTTCACAGCACAGCCCTACCTGAGAACAATAAACAGATGACTGAGATACAAATGTTTGAGAGTAAAGAGCTTAGTGGTACTGACGCTTTTGTAGAAAAGCTGATTAAAGAAAGCCTTGCTAAGCTTGAGGAAGAGGAGCCGAGTTTGGACTATTTTGTAAGATGGGAACTAGGTGCATGCTGGGTACAACATTTGCAAGACCAAAACAGTACAGAAAAAGATAAGAAACCGTCTTTGGAGAAGGCTAACAATGAAATGAAGGTTGAGGGTCTTGGGAAACCCCTGAAAGCCCTCAAGAATAATAAAAAGAAATCTGATTCAAGCAATCCAAGTCTTGCATCTGAACATTCAAAATCTAATCTCGAAGCTGAAAATACTGCATTGTCCTCAAGTGAAGCCCAGCATGAAACTGCAGAAGCTGAGAATGAACTTGTGCTGAAACGAATGTTATCTGAGGCAGCTTTTACCAGATTGAAAGAATCCGGAACTGGACTTCACTGCAAGTCTATGCAAGATTTGGTCGACTTATCTCAGAAATATTACATGGATGTTGCCATCCCAAAACTGGTAGCAGATTTTGGCTCATTGGAACTTTCTCCAGTTGATGGTCGAACGCTAACTGATTTTATGCATACTAGGGGTCTGCGAATGCGATCTCTTGGACATGTTGTCAAGCTTTCTGAAAAACTTTCACATGTGCAATCACTTTGCATTCATGAGATGATAGTTCGAGCTTTCAAGCACATCCTGAGGGCAGTTATTTCTGCTGTTGTTGACAAGGAGAAAACGGCTTCATCAATAGCTGGTGCATTGAATTTGCTGTTTGGTGTTCCTGAAAATAGAGAAACAGATGAATCATGTGATGTCCACCCTCTTGTGTGGAAATGGCTAGAGAGATTTTTGAAGAAACGATTTGACTGGAATCTTAACAAGTTGAACTATAAAGATGTGAGGAAATTTGCAATTCTCCGCGGCTTGTGTCACAAGGTGGGAATCGAGCTTGTTCCAAGGGATTTCGACATGGATTCTCCATTTCCCTTTCAAAAGTCTGATATTGTCAGCTTGGTTGCAGTTCACAAGCAAGCAGCATGCTCATCTGCAGATGGAAGGCAGCTCCTGGAGTCCTCCAAAACAGCTTTAGACAAGGGAAAGCTTGAAGATGCTGTTACCTATGGGACAAAGGCTCTTGCGAAGCTTGTAGCAGTTTGTGGTCCCTACCATCGGATGACAGCGGGGGCATACAGCCTCCTTGCTGTAGTTTTATATCATACCGGAGACTTCAATCAGGCTACGATTTATCAACAAAAAGCTTTGGATATCAATGAGAGAGAGTTAGGTTTGGATCATCCCGATACCATGAAGAGCTATGGGGATCTTGCTGTGTTCTATTACAGACTTCAGCATACAGAGCTGGCTCTTAAATATGTGAAGCGTGCTTTATACCTTTTGCATCTGACATGTGGCCCGTCTCATCCAAATACTGCCGCAACCTACATTAATGTGGCTATGATGGAGGAAGGTCTAGGGAATGTACATGTTGCTCTCAGATATCTTCACAAAGCATTAAAGTGCAACCAGAAATTACTTGGTGCAGATCATATTCAGACAGCTGCAAGTTATCATGCAATAGCAATAGCACTCTCATTGATGGAAGCATATCCGTTGAGTGTGCAGCATGAGCAAACAACTTTGCAAATTTTGCGTGCAAAGCTTGGCCCTGATGACTTGCGAACACAGGACGCGGCAGCTTGGCTTGAGTATTTTGAATCCAAGGCTTTTGAACAGCAAGAAGCTGCTCGAAATGGTACAAGAAAACCTGATGCATCAATAGCTAGCAAAGGCCATCTAAGTGTGTCGGATCTTCTTGACTACATTAATCCTAATCACGATACCAAAGGGAGAGACGCAGCAGCAAAGAGAAGAAACCAGGTAAGAGCGACATCCTACCAGAACAATGTCTCAGCAAGTTCTGACGAGTCTTCAAAAGAAATTCAAAAAGAGGCTTCAGATGAAGAGTTACATATACCTGAACCAGAAGGTAGTGCAGATTTTGAGAATGAGAGCAACTCGGCACCTGAACCAGAACAGCCAATTTTAGAAAAGATCCCAGATGAAAAGCCACAAACTTCTAATGAATTGTTGTCTGAAGCACATCCTGACGGAGATGATGGATGGCAATCAGTTCAAAGACCAAGATCAGATGGCTCATATGGCCGGCGGCTGAAACAAAGACGGGGAACACTTGGCAGAGTTCATAGTTACCAGAAAAATGTGGAAGTTGGCACTGAATATCCTTCGGTAAAGAGTGCTAATCAGAATAGTAAGTATTATTTCTTGAAGAAGCGGGCAGCACACCATGGGGGTTATGCAGATAACCGTGCTGTAAACATCAGCCAAGGCACTAAATTCGGAAGGAAAGCAGTCAAGGCTGTTGTTACATACAGGGTAAAGTCTACGCCCTCGGCTCCTATAGCTGTTGCAAATGAGACATTAGAAGTTTGTGACAAGGAACCTGATTCAGTTGATGTTAATCCAGTCAAGACTTCTATAGTCAGTCTTGGAAAAAGTCCTTCATACAAGGAAGTAGCCTTGGCTCCTCCTGGGACAATCTCCAAGTTGCAGGTCTACAATCCTCAAAGTGAGACTTCTGCTTGTCGCGAACATGATGTTGGAAAGCATGAAAAGGAAAATGTTGAAGCCCATAGAAGCATCAATCCAACCCCAAAAGAAGCAAAGAACGTGTTTAAAGAGAAGTCTGATGATTCTTTATCTGACTCTATAGAAGATTCACAAGATGATACTGTAGTTTCTACTGAGAAGAAAGAAGAAACTCAGTTGAATAAAATTGTGCAAGATGATTTTGTGGCAGCTGAGGGGCTTGAATCTGGGGACCTTGAAGCACAAGGAGCTGTTGATAACAGCGTAGTGATTGATGAAGTAGAGGATGCTGTGGACTCTTACAAACAAGAACTTGTTGCAAATAATCCGCCCTGCAGTTTTGAACCTTCTGATAATACAAGTTCTAGTCCACATGGTGGTGAGGATTTAGGGGTCAATTTATTATCACCTAGTCAGAATCAAGCTGGGGCAATACCGTATAAGAAATTGTCTGCATCAGCAGCTCCATTCAACCCATCACCTGCCATTGCACGTGCTGCACCTATTGCCATTAATATGACGCATCCTTCTGGTCCTGGTGCTGTTCCAGCTATTGGTCCCTGGCCAGTAAACATGAACGTTCACCCCGGACCTGTTAGCCCAATGTGTTCCTCTCCTCACCATGCATATCCATCCCCTCCAACAACACCAAACATGATACAACCATTGCCATTCATGTATCCTCCTTACTCTCAACCTCAGTCAGTACAAACCAGTAGTGCCTTTCATGCCAATCATTTTACATGGCAGTGTAATTTGAACCCCGTCATATCTAAGTTTGGTCCTGGTGCTATTTGGACCGGCTGTCATCCTGTGGAATATCCTCGTCCAGTACCTATTGTTGAATCAATAATCCCCGACATCATTTCCGAGCCACAGGTGCAGTTTCATACAGCTGAAAGTCCAAGTTCAGCCCCAGTTCTGCTTGAGGACATTGATAAGGTTGGGGATTCTAATAAAGAGGTAAAAACTTCAGGGTTGGAGTTGACCGAAGATGAATTGGTGAGAGTTAGTTCAGAAAATATAAAAGAAAATGGTAATCCAAATTTTCCTGGAACCGACAATGCTGGGAACGAGCCAAACCAAAATGTTGGCTCTAACAGCAACACTGGCTGTAGTGAAATGAACATGGATGATGAGAAAACATTCAGCATTTTGATTCGGGGAAGAAGAAACCGAAAACAAACTCTGAGAATGCCAATAAGTTTACTTACTCGACCCCATGGCTCTCAGTCATTTAAGGTTATCTATAACCGTGTCGTTAGAGGAAGTGATTCTCCGAGGTCCATAAATTTCTCTTCTAGTAAACATTGTACTGCCACTGCTTAA 5475 0.4336 MAPRYSRGKAKGEKKKKEEKILPVVMDITVNLPDETSVVLKQGISTDRIIDVRRLLSVNTETCYITNFSLSHEIRGTRLKDTVDVSALKPCLLTLVEEDYDGEGAVAHVRRLLDIVACTTSFGPSSPPKNGARSSKSQSPPPAKQSPKDAAVTDGDGEISHSCPKLDSFYEFFSLSNLTAPLQYVKKASRRYVEEISEEDHLFSLDVKVCNGKVVHVEACRKGFYSVGKQRILCHNLVDLLRQISRAFDNAYDDLLKAFLERNKFGNLPYGFRSNTWLVPPIAAQSPSFFPPLPVEDENWGGNGGGLGRDGEYDLIPWANKFSFVASMPCKTAEERQVRDRKAFLLHSLFVDVAIFRAIRAVKHVLEDPSLSCSAAENDIYSEKAGDLSIRVLKDGSVASCKIDSKIDGVEATGVNQKDLVERNLLKGITADENTAAHDITTLGVVYVRYCGYVVVVKVEGEANEKVNSSSHQNNELFDQPEGGANALNINSLRFLLHSTALPENNKQMTEIQMFESKELSGTDAFVEKLIKESLAKLEEEEPSLDYFVRWELGACWVQHLQDQNSTEKDKKPSLEKANNEMKVEGLGKPLKALKNNKKKSDSSNPSLASEHSKSNLEAENTALSSSEAQHETAEAENELVLKRMLSEAAFTRLKESGTGLHCKSMQDLVDLSQKYYMDVAIPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHILRAVISAVVDKEKTASSIAGALNLLFGVPENRETDESCDVHPLVWKWLERFLKKRFDWNLNKLNYKDVRKFAILRGLCHKVGIELVPRDFDMDSPFPFQKSDIVSLVAVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQKLLGADHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPNHDTKGRDAAAKRRNQVRATSYQNNVSASSDESSKEIQKEASDEELHIPEPEGSADFENESNSAPEPEQPILEKIPDEKPQTSNELLSEAHPDGDDGWQSVQRPRSDGSYGRRLKQRRGTLGRVHSYQKNVEVGTEYPSVKSANQNSKYYFLKKRAAHHGGYADNRAVNISQGTKFGRKAVKAVVTYRVKSTPSAPIAVANETLEVCDKEPDSVDVNPVKTSIVSLGKSPSYKEVALAPPGTISKLQVYNPQSETSACREHDVGKHEKENVEAHRSINPTPKEAKNVFKEKSDDSLSDSIEDSQDDTVVSTEKKEETQLNKIVQDDFVAAEGLESGDLEAQGAVDNSVVIDEVEDAVDSYKQELVANNPPCSFEPSDNTSSSPHGGEDLGVNLLSPSQNQAGAIPYKKLSASAAPFNPSPAIARAAPIAINMTHPSGPGAVPAIGPWPVNMNVHPGPVSPMCSSPHHAYPSPPTTPNMIQPLPFMYPPYSQPQSVQTSSAFHANHFTWQCNLNPVISKFGPGAIWTGCHPVEYPRPVPIVESIIPDIISEPQVQFHTAESPSSAPVLLEDIDKVGDSNKEVKTSGLELTEDELVRVSSENIKENGNPNFPGTDNAGNEPNQNVGSNSNTGCSEMNMDDEKTFSILIRGRRNRKQTLRMPISLLTRPHGSQSFKVIYNRVVRGSDSPRSINFSSSKHCTATA 1824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01033 1824 MobiDBLite consensus disorder prediction 1139 1155 - -
Vifa4g01033 1824 SMART tpr_5 991 1024 IPR019734 GO:0005515
Vifa4g01033 1824 SMART tpr_5 907 940 IPR019734 GO:0005515
Vifa4g01033 1824 SMART tpr_5 949 982 IPR019734 GO:0005515
Vifa4g01033 1824 MobiDBLite consensus disorder prediction 1722 1758 - -
Vifa4g01033 1824 Coils Coil 617 637 - -
Vifa4g01033 1824 Gene3D Tetratricopeptide repeat domain 981 1153 IPR011990 GO:0005515
Vifa4g01033 1824 Gene3D Tetratricopeptide repeat domain 866 980 IPR011990 GO:0005515
Vifa4g01033 1824 MobiDBLite consensus disorder prediction 1119 1247 - -
Vifa4g01033 1824 SUPERFAMILY Hypothetical protein c14orf129, hspc210 177 266 IPR023231 -
Vifa4g01033 1824 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 862 1112 - -
Vifa4g01033 1824 MobiDBLite consensus disorder prediction 1721 1758 - -
Vifa4g01033 1824 MobiDBLite consensus disorder prediction 563 637 - -
Vifa4g01033 1824 Pfam Tetratricopeptide repeat 990 1064 - -
Vifa4g01033 1824 Pfam Tetratricopeptide repeat 906 976 - -
Vifa4g01033 1824 MobiDBLite consensus disorder prediction 600 631 - -
Vifa4g01033 1824 MobiDBLite consensus disorder prediction 564 583 - -
Vifa4g01033 1824 CDD CLU-central 696 837 IPR033646 -
Vifa4g01033 1824 SUPERFAMILY TPR-like 944 1071 IPR011990 GO:0005515
Vifa4g01033 1824 MobiDBLite consensus disorder prediction 1123 1137 - -
Vifa4g01033 1824 Pfam Translation initiation factor eIF3 subunit 135 694 836 IPR033646 -
Vifa4g01033 1824 SUPERFAMILY TPR-like 873 978 IPR011990 GO:0005515
Vifa4g01033 1824 MobiDBLite consensus disorder prediction 1156 1177 - -
Vifa4g01033 1824 MobiDBLite consensus disorder prediction 1381 1421 - -
Vifa4g01033 1824 MobiDBLite consensus disorder prediction 1489 1519 - -
Vifa4g01033 1824 ProSiteProfiles Clueless (Clu) domain profile. 296 572 IPR025697 -
Vifa4g01033 1824 Pfam Mitochondrial function, CLU-N-term 46 116 IPR028275 -
Vifa4g01033 1824 ProSiteProfiles TPR repeat profile. 907 940 IPR019734 GO:0005515
Vifa4g01033 1824 MobiDBLite consensus disorder prediction 123 159 - -
Vifa4g01033 1824 MobiDBLite consensus disorder prediction 1375 1437 - -
Vifa4g01033 1824 MobiDBLite consensus disorder prediction 123 144 - -
Vifa4g01033 1824 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 11 1438 IPR027523 GO:0006996
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01033 Vifa-Chr4 298606948 298620596 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01033 K03255 - gmx:100808136 2776.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01033 4 298606948 298620596 Vifa4g01033 4 298606948 298620596 ECH