Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01027 ATGACACCCATACAACTCATCATCATCTTCTCACTCACACTCCTCACTACCAAAATACTCAAACTCTGTTTTTCCGCAATCAACGCTACACAAAACAGGAAAACCGCCGTCGGATTCTTCCATCCATACACCAACGACGGCGGCGGAGGAGAAAGGGTTCTATGGTGCGCCGTCAAAGCTATCCAGGAAGAAAATCCTGACCTTCAATGTCTTGTCTATACAGGCGATCACGATGCTACACCTCACTCGTTGTCCAATCGTGCACTTGATCGATTTGGTGTTACCCTTTTATCCCCTCCTAAGGTGGTTCATTTGTACAAGAGGAAGTGGATTGAAGAAACGACTTATCCACACTTTACTATGATTGGTCAAAGTCTAGGCTCTATGTATCTTGCATGGGAAGCTTTGTGCAAGTTTACCCCTTCCTATTATTTTGATACAAGTGGATATGCTTTTACATATCCACTTGCTAGGTTGTTTGGATGCAAAGTTATTTGCTATACACACTACCCTACTATCAGTTCAGACATGCTATCTCGTGTTCGCCAACGCAGCTCCATGTATAATAATGATGCTTTGGTTGCCAAAAGTGTTTGGCTTTCTCGGTGCAAAATAATCTATTACACAATCTTCAGCTGGTTGTATGGGATTGTTGGATCTTGCGCACATCTAGCTATGGTGAATTCATCTTGGACCAAAGCCCATATTGAAAATCTTTGGGGAGTTCCAGATCGGATTAAGCGAGTTTATCCTCCTTGTGATACTTCAGGACTTCAGGTGCTTCCTTTGGAAAGATCGTCTGAAATTCCTGTAATAATATCTGTTGCACAATTTCGACCAGAGAAGGCTCACAGTCTCCAACTTGAGGCCTTCTCAGTTGCCGTTAAGAGATTAGATTCTGGCTTGCCGAAACCTAAGCTCCAGTTTGTCGGAAGCTGTAGAAATAGATCAGATGAAGATAGACTTCAAATGTTAAAAGAGAAAGCAATTGAGCTGAATGTGAATGAACAAGTGGAATTCCACAAAAACGTAACATACAGAGATTTGGTGGGACTTTTAGCCGGCGCTGTTGGTGGAATCCATTCCATGACAGATGAGCATTTTGGGATTAGTGTTGTAGAATATATGGCTGCCGGTGCCATCCCAATTGCTCATAATTCAGCTGGCCCAAAAATGGACATTGTATTGGAAGAAGATGGACAACAAACAGGATTTCTCGCCTGCTCCATTGAAGAATATGCAGACGCAATTTTTAGAGTCATTAAGATGTCAGAGACTGAGAGATTTCAGATGGCCGCTGCTGCAAGGAAACGAGCAAGTAGGTTTTCTGAGCAGAAGTTTTCCGATGATTTCAAAGCCGCAATACGCCCTATTCTCAGTCGTGTTTCTAGATGA 1395 0.428 MTPIQLIIIFSLTLLTTKILKLCFSAINATQNRKTAVGFFHPYTNDGGGGERVLWCAVKAIQEENPDLQCLVYTGDHDATPHSLSNRALDRFGVTLLSPPKVVHLYKRKWIEETTYPHFTMIGQSLGSMYLAWEALCKFTPSYYFDTSGYAFTYPLARLFGCKVICYTHYPTISSDMLSRVRQRSSMYNNDALVAKSVWLSRCKIIYYTIFSWLYGIVGSCAHLAMVNSSWTKAHIENLWGVPDRIKRVYPPCDTSGLQVLPLERSSEIPVIISVAQFRPEKAHSLQLEAFSVAVKRLDSGLPKPKLQFVGSCRNRSDEDRLQMLKEKAIELNVNEQVEFHKNVTYRDLVGLLAGAVGGIHSMTDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLACSIEEYADAIFRVIKMSETERFQMAAAARKRASRFSEQKFSDDFKAAIRPILSRVSR 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01027 464 Gene3D Glycogen Phosphorylase B; 258 442 - -
Vifa4g01027 464 PANTHER GDP-MAN:MAN(3)GLCNAC(2)-PP-DOL ALPHA-1,2-MANNOSYLTRANSFERASE 10 460 IPR038013 GO:0004377
Vifa4g01027 464 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 39 459 - -
Vifa4g01027 464 CDD GT4_ALG11-like 36 450 IPR038013 GO:0004377
Vifa4g01027 464 Pfam ALG11 mannosyltransferase N-terminus 35 240 IPR031814 -
Vifa4g01027 464 Pfam Glycosyl transferases group 1 270 438 IPR001296 GO:0016757
Vifa4g01027 464 FunFam GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase 261 442 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01027 155 460 Glycosyltransferase AT1G78800 24.762 1.80e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01027 K03844 - gmx:100808662 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01027 4 297103311 297106626 Vifa4g01027 4 297103311 297106626 ECH