Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01017 ATGACATTTTGCAATTTTTCTAAGCACCCAATCTTCATGGACAATCTATCCCCTTTACACCACCTTAATCCTTATTCTCATCAAAACCATAAAAGAAATCACATGCTACCTAAAAGCCTTCCACCTCCTTCAATTTCTCTTCCAATTCCAGATACCCATTTCCCCCCTTCTTCTCCTATTCAATTTTCTCCTCCAAAAATTTCTCCTTTTTTTCACCCTTTTGATGAATTCAATGAGTTAACAACTTTGAATTCTGTCAAGGAAATGCATGCCCAGATGGTTAAAAACCCTAAAAATGTGAACTTTACTACAATTGATGGAACCATGATGAGAAACTATTTGGAGTTTGGTGATTTTGTATCAGCAATAAAAGTGTTCTTTGTGGGTTTTGCAAGGAATTATCTTTTGTACAATTCTTTTGTGGAAGAATTTGAATGTTTTGGAGGTGACCCATTTGAGATTCTGGTGGTTTTCAATGAATTGCATAGTAAAGGTGTGGAATTTGATAGTAAAGCTTTCACCTTTATTCTGAAAATTTGTATGGCTTTAAAGGATCTGTGTGTTGGTTTGGAAATTCATGCTTGTTTGATCAAGAAAGGGTTTCATGATGATGTACACTTGAATTGTGCATTGATCAATTTCTATGAGAAATGTTGGAGTATAGATAAGGCAAATCAAGTATTTTATGAGACTCCGAATCAAGAAGATTTTTTGTGGAATACAATAGTTATGGCGAATTTGAGGAGCGAGAAATGGAAGAATGCCTTAGAGTTGTTTGGTAATATGCAGAGAGTTTCTGCAAAAGCCACTCCTGGCCTCATTGTCAAGATATTGCAAGCATGTGGAAAATTAAGAGCTCTTGATGAAGGAAAACAGCTTCATGGGTATGCTTTAAGATTTGGACTAGTTTCAAATACTAGAGTTTGCAATTCCATTATTAGTATGTACTCTAGAAACAAAAGATTCAAACTAGCTAAGTCAGTTTTTGATTCGATGGAGGTTTGTAATCGTAACTTGTCGTCTTGGAACTCAATAATTTCGAGTTATACGGTCGATGGCTGTTTGAGTGATGCATTTGATATTATCGTCAAAGAAATGGAGTGTTCTGGTATTAAACCTGATATTATAACTTGGAATTCGGTTTTGTTAGGCTATGTTCTTCAGGGGTCATTTGAAATGGTTCTCACTAGTTTTCGAAGCCTGTGTAATGCAGGCTTCAAGCCAGATTCGTGCTCGGTAACTAGTTCTCTAAAAGCAATTATTGAATTAGGTTTCTTTAAATTAGGGAAAGAAATCCATGGTTACATAATGAAAAGTAATCTTAACTGTGATGTATATGTTTGTACTACATTGGTGGATATGTATGTTAAGAATGATTGCTTAGAAAAGGCTCATGCAGTGTTCCGTCACGCAAAGAACAAAAATGTCTGCACCTGGAATTCTTTGATATCAGGTTACTCCTACAAGGGACTGTTTGGTGACGCCGAAAAACTATTGAATCAGATGGAGGAGGAAGGGATAAAACCTGATTTGGTGACATGGAATTGTTTGGTTTCAGGTTATTCAATGCGAGGCCGGATCGAGGAAGCTTTAGCAGTGATGAATCGGATCAAAAGTTCAGGAATTACTCCTGATGTGGTGTCTTGGACTGCTTTGATATCAGGATGTTCTCAAAACGGGAAATACACCGATGCTCTAAAGGTTTTCAGCCAAATTCAAGCTGAAAATGTAAAACCTAATTTGACAACGATTTGCAGCTTACTTTGTGCATGTGCAGGCCCGTCTCTGTTGAAGAAAGGCGAAGAGATTCACTGCTTTAGTATGAAACTTGGGATCGTAGATGATATATATGTTGCAACAGCGCTCATTGATATGTATAGTAAAGCAGGAAAGTTAGAAGTAGCACATAATGTTTTCAGCAAAATTCAGGAGAAAACACTTCCGTGTTGGAATTGCATGATGATGGGATATGCTATACATGGCCATGGTGAAGAGGTAATGATTCTTTATGACAAAATGCGCGACAAGCGCATTAGACCCGACGCGATAACGTTCACAGCTCTTCTATCTGGCTGCAAGAATTCAGGTTTAGTCGATGAAGGATGGAAATACTTCGACAGTATGCAAGAAGATTATAATATTATTCCAACGATTGAGCACTACTGTTGCATGGTAGACCTTCTTGGAAAAGCCGGGTTTCTTGACGAAGCTTCGGATTTCATCAAAACTATGCCGATTAAGCCGGATGCGAGTATCTGGGGTGCTCTTCTAACATCCTGCAGAATTCACAAAAACATTAAGCTAGCAGAGGTTGCAGCAGAGAAGCTTTTCAAGATGGAACCAAAAAATTCTGCTAACTATGTGTTGATGATGAATTTATATTCGAGTTTAAACCAATGGGATGATGTGGAGCGTCTCAAACGCTCGATGATCACTTTGGCGGTGAAAAGTCCACCTGTTTGGAGCTGGACCCAAGTTAATCAGAGTATTCATGTGTTTTCGACATATGGGAAACCGCATCCAGAAGAAGGGGAAATATACTTCGAGCTATATCGGTTAATTTCCGAGATACGAAATCTTGGTTATGTAGCTGATCTCAATTGTGTATGTCAAAATATTGATGACAACGAGAAAGAGAAGGTTCTTCTGAGTCACACTGAGAAGTTGGCAATGGTTTATGGAGTGATGAAAATGAAAGGTGGATCGCCAATTAGAGTTGTTAAGAACACGAGAATTTGTAGAGACTGTCATACAGTTGCAAAGTACATTTCTTTGGCCCGAAATTGCGAGATTTTACTTAGAGATTATGGTCGTTTTCACCATTTTAAAGACGGAAAATGTGCTTGTAACGATTGTTGGTAA 2862 0.3795 MTFCNFSKHPIFMDNLSPLHHLNPYSHQNHKRNHMLPKSLPPPSISLPIPDTHFPPSSPIQFSPPKISPFFHPFDEFNELTTLNSVKEMHAQMVKNPKNVNFTTIDGTMMRNYLEFGDFVSAIKVFFVGFARNYLLYNSFVEEFECFGGDPFEILVVFNELHSKGVEFDSKAFTFILKICMALKDLCVGLEIHACLIKKGFHDDVHLNCALINFYEKCWSIDKANQVFYETPNQEDFLWNTIVMANLRSEKWKNALELFGNMQRVSAKATPGLIVKILQACGKLRALDEGKQLHGYALRFGLVSNTRVCNSIISMYSRNKRFKLAKSVFDSMEVCNRNLSSWNSIISSYTVDGCLSDAFDIIVKEMECSGIKPDIITWNSVLLGYVLQGSFEMVLTSFRSLCNAGFKPDSCSVTSSLKAIIELGFFKLGKEIHGYIMKSNLNCDVYVCTTLVDMYVKNDCLEKAHAVFRHAKNKNVCTWNSLISGYSYKGLFGDAEKLLNQMEEEGIKPDLVTWNCLVSGYSMRGRIEEALAVMNRIKSSGITPDVVSWTALISGCSQNGKYTDALKVFSQIQAENVKPNLTTICSLLCACAGPSLLKKGEEIHCFSMKLGIVDDIYVATALIDMYSKAGKLEVAHNVFSKIQEKTLPCWNCMMMGYAIHGHGEEVMILYDKMRDKRIRPDAITFTALLSGCKNSGLVDEGWKYFDSMQEDYNIIPTIEHYCCMVDLLGKAGFLDEASDFIKTMPIKPDASIWGALLTSCRIHKNIKLAEVAAEKLFKMEPKNSANYVLMMNLYSSLNQWDDVERLKRSMITLAVKSPPVWSWTQVNQSIHVFSTYGKPHPEEGEIYFELYRLISEIRNLGYVADLNCVCQNIDDNEKEKVLLSHTEKLAMVYGVMKMKGGSPIRVVKNTRICRDCHTVAKYISLARNCEILLRDYGRFHHFKDGKCACNDCW 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01017 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 545 579 IPR002885 -
Vifa4g01017 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 373 IPR002885 -
Vifa4g01017 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 509 IPR002885 -
Vifa4g01017 953 FunFam Pentatricopeptide repeat-containing protein 705 845 - -
Vifa4g01017 953 Pfam Pentatricopeptide repeat domain 362 412 IPR002885 -
Vifa4g01017 953 Pfam PPR repeat 620 645 IPR002885 -
Vifa4g01017 953 Pfam PPR repeat 238 264 IPR002885 -
Vifa4g01017 953 Pfam PPR repeat 720 744 IPR002885 -
Vifa4g01017 953 Pfam PPR repeat 308 334 IPR002885 -
Vifa4g01017 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 510 544 IPR002885 -
Vifa4g01017 953 Gene3D Tetratricopeptide repeat domain 74 236 IPR011990 GO:0005515
Vifa4g01017 953 Pfam DYW family of nucleic acid deaminases 861 953 IPR032867 GO:0008270
Vifa4g01017 953 Pfam PPR repeat family 649 692 IPR002885 -
Vifa4g01017 953 Pfam PPR repeat family 544 592 IPR002885 -
Vifa4g01017 953 Pfam PPR repeat family 474 513 IPR002885 -
Vifa4g01017 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Vifa4g01017 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 681 711 IPR002885 -
Vifa4g01017 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 646 680 IPR002885 -
Vifa4g01017 953 NCBIfam pentatricopeptide repeat 308 334 IPR002885 -
Vifa4g01017 953 NCBIfam pentatricopeptide repeat 512 546 IPR002885 -
Vifa4g01017 953 NCBIfam pentatricopeptide repeat 547 580 IPR002885 -
Vifa4g01017 953 NCBIfam pentatricopeptide repeat 683 717 IPR002885 -
Vifa4g01017 953 NCBIfam pentatricopeptide repeat 649 682 IPR002885 -
Vifa4g01017 953 NCBIfam pentatricopeptide repeat 341 375 IPR002885 -
Vifa4g01017 953 NCBIfam pentatricopeptide repeat 477 510 IPR002885 -
Vifa4g01017 953 FunFam Pentatricopeptide repeat-containing protein mitochondrial 598 704 - -
Vifa4g01017 953 Pfam E motif 763 825 IPR046848 -
Vifa4g01017 953 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 514 890 IPR046960 GO:0003723|GO:0009451
Vifa4g01017 953 Gene3D Tetratricopeptide repeat domain 438 573 IPR011990 GO:0005515
Vifa4g01017 953 Gene3D Tetratricopeptide repeat domain 245 396 IPR011990 GO:0005515
Vifa4g01017 953 Gene3D Tetratricopeptide repeat domain 697 771 IPR011990 GO:0005515
Vifa4g01017 953 Gene3D Tetratricopeptide repeat domain 604 696 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01017 Vifa-Chr4 293339147 293342008 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01017 169 953 Glycoside Hydrolase AT3G49170 29.976 1.85e-124 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01017 - - psat:127137936 1763.04