Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01003 ATGAGGAAAGAAGTAGAAAAAGTTGACTTTGAAAAAGTGATTGAAGAATTTGAGATGATAACAAAAGATGCTGAGAATGTTCAAAAGGAAACACTGAGAAAGATTTTGGAAGAAAATGCATCAACTGAATATTTGCAAAATTTAGGACTTAATGGAAGAACCGACCCCGAAAGTTTCAAGGCTTGTGTTCCATTGGTGACATACAAAGATTTAGAGCCTTATATCCAAAGAATGGTTGATGGTGATGTTTCTCCAATTCTCACTAGAAAACCAATCACAGTTGTATCCGTAAGTTCCGGCACTAGTCAAGGGAATCGAAAATTTATTCCATGGAATGATGAATTGTTTAAAACTACAATGCAAATATATCAAACCTCTTATGCTTTTAGGAGCAGAGATTTTCCTATCCAAGATGGAAAGGATATGAACTTTATCTATGGCAACAACGCACCGCCAAAAAAAGGGGGCGTGACACTAGGATCAGCCACATCAAATGTGTATGGAAATCCAGGATACAAGAAAGCAATGCAAGCAATAAAATCTCCAAGCTGCAGTCCAGATGATGTAATTTTCAGTCCTGATTTTCAGCAATCACTCTACTGCCACATCTTATGTGGACTACTTTTCAGAGAAGAAGTTCAATCAATTTCATCAACATTTGCACACAGTATTATCTATGCTTTCAGAGCATTTGAACAAGATTGGGAAGAACTTGTTAATGATATCAAAAAAGGCGTTCTTAGCAACAAAATCACTGTTCCATCCATTAGAATCGCTATGTCGAAATTGCTGAAACCAAATCCTGAACTAGCTAACTTGATCCACAAGAAATGCACAGGATTAGGCAACTGGTATGGATTGATACCAGAGCTTTTTCCTAATGTTAAGTATATTCAAGGAATCATGACAGGTGCAATGGAGCCTTATTTGAAAAAGTTGAGACACTATGCTGGAGAAGTTCCTTTATTGACTTCTGAGTATGGTTCTTCTGAAGGATGGATTGGTTCAAACGTGAATCCTAAAGCAGCTCCTGAATTTGCTACTTATGTTGTTCTTCCTCAAATTGCATACTTTGAATTCATTCCATTGGCACAACTTGATGGAAATCAAGTAGAACTTAAGGCAATTGGCTTAACTGATGTGAAGATTGGTGAGGAGTATGAGATTGTTTTCACCAATCCTGCAGGTTTATACAGGTATAGGCTAGGAGATGTAGTAAAGGTTATGAGGTTCCATAACTCAACTCCAGAAATCAAGTATATGCGCAGGAGTGGTCTTTTGCTTACAATAACCACTGACAAGCATAGTGAGACTGATTTACAATTGTCAGTAGAAAATGCATCCAAGTTTTTAGCTGAGGAGGAAATAGAGGTGATTGACTACACTAGCTACATAGATTTATCCACAGAACCAGGACACTATGTTATCTTCTGGGAAATTAGTGGTGAAACAAGTGATCAACTGCTTGCTGAGTGTTGCAATTGTTTGGACAAGTCTTTTATTGATCCAGCTTATATGTTTTATAGAAATTGCAAAGGTATTGGTGCTCTTGAACTCCGAGTTGTTGGAAAAGGAACATTCCAGAAGATTCTTGAGAGCCAAGTTCAAAGAGGTGTACCTGTGAGTCAGTTCAAGACACCTAGGTGTGTTGGTCCTACAAACATCACAATGTTGCAAATTTTGTTGGAAAATGTTGTCAACAGATATGTTAGTACTGCTTACAATTGA 1728 0.3744 MRKEVEKVDFEKVIEEFEMITKDAENVQKETLRKILEENASTEYLQNLGLNGRTDPESFKACVPLVTYKDLEPYIQRMVDGDVSPILTRKPITVVSVSSGTSQGNRKFIPWNDELFKTTMQIYQTSYAFRSRDFPIQDGKDMNFIYGNNAPPKKGGVTLGSATSNVYGNPGYKKAMQAIKSPSCSPDDVIFSPDFQQSLYCHILCGLLFREEVQSISSTFAHSIIYAFRAFEQDWEELVNDIKKGVLSNKITVPSIRIAMSKLLKPNPELANLIHKKCTGLGNWYGLIPELFPNVKYIQGIMTGAMEPYLKKLRHYAGEVPLLTSEYGSSEGWIGSNVNPKAAPEFATYVVLPQIAYFEFIPLAQLDGNQVELKAIGLTDVKIGEEYEIVFTNPAGLYRYRLGDVVKVMRFHNSTPEIKYMRRSGLLLTITTDKHSETDLQLSVENASKFLAEEEIEVIDYTSYIDLSTEPGHYVIFWEISGETSDQLLAECCNCLDKSFIDPAYMFYRNCKGIGALELRVVGKGTFQKILESQVQRGVPVSQFKTPRCVGPTNITMLQILLENVVNRYVSTAYN 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01003 575 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 8 574 IPR004993 -
Vifa4g01003 575 Pfam GH3 auxin-responsive promoter 16 550 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01003 Vifa-Chr4 290553460 290555439 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01003 9 572 EF-hand Containing Proteins AT1G23160 37.478 2.26e-126 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01003 K14506 - gmx:100777944 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01003 4 290553460 290555439 Vifa4g01003 4 290553460 290555439 ECH