Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00979 ATGAAGGATTTGAATTCCGATCTGTTTGACCCTGTTACGGTCATGGAATCCGAATGGGCCCACGGTGGTTCTAACTCCGATGCCGATTTCGGTTTCGCTTTTAATGATAGTAATTTTTCCGATAGGATTCTCCGGATCGAGATCATGGCTGACCCCGTTGATCCTCAGCCGGATTCGGAGACTTGTACCACCATCGCTGATTGGGCCCGGCACCGTAAGAGGAGACGCGAGGATATTAAGAAAGATAACGTTGGAGATCTGCCGGATGAGCAAATTTTGAATGGGAACCAACCTGATATGGATGATTGTGTTGCTTCGGAAAATCAAGATGAAGAGGTTGTTGCGATGGTTGAAGAATCGCCTTCTGGTGATGAAGCTGTAATTAGCAATGATGATTTAAACCTGGGCATGGATTATGCCGAACCTGCAGTTGTTAGATTTAAAACCCTACATATCAGTTCTCCTATCCTGGCCGCAAAAAGCCCCTTTTTCTATAAGCTTTTCTCGAATGGGATGAGGGAATCAGAGCTGAGACATGTCACCCTCAGGATCAATGCCTCTGAAGAAGCTGCTTTGATGGAGCTACTGAATTTTATGTATAGTAATACCTTGAGCATTAAGACTGCACCTGGTTTGCTTGATGTGTTGATGGCCGCAGATAAATTTGAAGTTGCTTCATGCATGCGATATTGTAGCCGGTTGTTGCGTAATATTGCCATGACTCCTGAATCTGCATTGCTTTACCTGGAGCTACCTTCTAGTGTCCTAATGGCTGAGGCAGTTCAACCATTGACTGATGCTGCAAAGCAGTATCTTGCTAGCCGATACAAGGATATAACCAAGTTCCAGGAAGAGGTTATGAACTTACCCCTAGTTGGAGTAGAAGCAATATTATCCAGTGATGATCTCCAGGTTGCGTCAGAAGATGCTGTTTATGACTTTGTGTTGAAGTGGGCTAGACAACAGTATAGCAATGTGGAAGAAAGACGAATAGTCCTAGGTTCACGGCTTGCAAGATTAATTCGCTTCCCTTATATGACCTGCCGAAAGCTTAAGAAGGTCTTGACCTGTAGTGACTTTGAACATGATGTTTCATCCAAGCTTGTACTTGAGGCTCTATTTTTCAAGGCAGAGGTTCCACATCGCCAACGGTCGCTGGCAGCAGAAGAGCCTACTTGCTCAAGCCGTCGTTTCTTGGAGAGGGCATACAAATATCGTCCTGTCAAGGTGGTTGAATTTGAACTTCCTCGCCAGCAGTGTGTGGTGTACTTGGATCTAAAGCGTGACGAGTGTAACAACTTGTTCCCATCTGGCCGGGTTTATTCTCAGGCATTTCACTTGGGTGGGCAAGGGTTTTTTCTATCAGCACATTGTAACATGGATCAACAAAGCTCTTTCCATTGTTTTGGACTGTTTTTAGGAATGCAGGAAAAGGGCTCCGTGAGCTTCACCGTGGACTATGAATTTGCAGCGAGGTCAAGACCAACAGAGGAATTCGTCAGCAAATACAAAGGCAATTACACATTCACAGGTGGCAAGGCCGTCGGCTACAGAAACTTGTTTGCAATTCCGTGGACTTCTTTCATGGCCGAGGATTGCCTTTACTTCATCAACGGCGTTCTACACCTTAGGGCTGAGCTCACCATCAGACACTGA 1656 0.4547 MKDLNSDLFDPVTVMESEWAHGGSNSDADFGFAFNDSNFSDRILRIEIMADPVDPQPDSETCTTIADWARHRKRRREDIKKDNVGDLPDEQILNGNQPDMDDCVASENQDEEVVAMVEESPSGDEAVISNDDLNLGMDYAEPAVVRFKTLHISSPILAAKSPFFYKLFSNGMRESELRHVTLRINASEEAALMELLNFMYSNTLSIKTAPGLLDVLMAADKFEVASCMRYCSRLLRNIAMTPESALLYLELPSSVLMAEAVQPLTDAAKQYLASRYKDITKFQEEVMNLPLVGVEAILSSDDLQVASEDAVYDFVLKWARQQYSNVEERRIVLGSRLARLIRFPYMTCRKLKKVLTCSDFEHDVSSKLVLEALFFKAEVPHRQRSLAAEEPTCSSRRFLERAYKYRPVKVVEFELPRQQCVVYLDLKRDECNNLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFTVDYEFAARSRPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMAEDCLYFINGVLHLRAELTIRH 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00979 551 SMART BTB_4 111 239 IPR000210 GO:0005515
Vifa4g00979 551 SMART BACK_2 254 356 IPR011705 -
Vifa4g00979 551 CDD BTB_POZ_ZBTB_KLHL-like 144 222 - -
Vifa4g00979 551 Gene3D - 271 377 - -
Vifa4g00979 551 SUPERFAMILY POZ domain 148 236 IPR011333 -
Vifa4g00979 551 FunFam BTB/POZ domain-containing protein POB1 273 377 - -
Vifa4g00979 551 Pfam BTB And C-terminal Kelch 262 354 IPR011705 -
Vifa4g00979 551 ProSiteProfiles BTB domain profile. 131 208 IPR000210 GO:0005515
Vifa4g00979 551 Pfam BTB/POZ domain 148 236 IPR000210 GO:0005515
Vifa4g00979 551 Gene3D Potassium Channel Kv1.1; Chain A 142 259 IPR011333 -
Vifa4g00979 551 FunFam BTB/POZ domain-containing protein POB1 130 260 - -
Vifa4g00979 551 SUPERFAMILY TRAF domain-like 438 549 - -
Vifa4g00979 551 PANTHER OS02G0260700 PROTEIN 20 550 IPR045890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00979 Vifa-Chr4 284524342 284527643 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00979 - - gmx:100776595 935.636